Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq2 109 6e-19 seq1 84.2 3e-11 >seq2 Length=5498963 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| ||| ||| || || |||| || || ||||| |||||||| Sbjct 3944423 TCCTTCTGGATGTTGTAGTCACTCAGGGTGCGACCGTCTTCAAGTTGCTTTCCAGCGAAG 3944364 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||| || || | || | || ||||| ||| ||| |||| | | | ||| Sbjct 3944363 ATGAGACGCTGTTGATCAGGAGGAATGCCTTCCTTATCC-TGAATTTTGGACTTAACGTT 3944305 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | | ||||| || ||||| |||| |||||||| || || || || ||||| || Sbjct 3944304 GTCAATGGTATCGCTAGACTCCACTTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGAC 3944245 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 3944244 GAAGATTTGCAT 3944233 Score = 100 bits (110), Expect = 3e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||||||||||| |||||||||||||| || ||||| || | ||||| || | || Sbjct 3944901 CAACACCAAATGCAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGAAAGAGTTCGACCATC 3944842 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | || || || || || || | ||||||||| || | || | | ||| ||||| Sbjct 3944841 TTCCAATTGTTTGCCTGCAAAGATCAATCGCTGCTGATCAGGTGGGATACCCTCTTTGTC 3944782 Query 43091 CATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 ||| ||| |||| ||| | | | |||||| |||||| || || | || || | Sbjct 3944781 TTGGATCTTTGACTTGA-CGTTGTCGATGGTGTCGGACGATTCGACTTCTAGAGTAATAG 3944723 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| || || || || || ||||| ||||| Sbjct 3944722 TCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 3944689 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||||||||| | || || | ||| ||||| ||||| Sbjct 3944652 CTCCTTCTGAATGTTGTAGTCTGACAGAGTCCGACCATCTTCCAACTGTTTACCGGCGAA 3944593 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||| ||||| | || | | ||| || || ||| ||| |||| | Sbjct 3944592 GATCAATCGCTGTTGGTCTGGAGGAATACCCTCTTTATCTTGGATCTTTGACTTGACATT 3944533 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | |||||| || || || || | ||||| || ||||| || || ||||| || Sbjct 3944532 GTCGATGGTGTCGGATGACTCGACTTCTAGAGTGATTGTCTTGCCTGTGAGGGTCTTGAC 3944473 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 3944472 GAAGATTTGCAT 3944461 >seq1 Length=6137194 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 ||||||| || |||||||| || || || | || || |||||||| || || || | Sbjct 5194746 CCTTTTGGATGTTGTAATCGCTGAGGGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGA 5194805 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | | |||||||||||| | || | | |||||||| ||| || |||| | Sbjct 5194806 TCAATCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGT 5194865 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| ||| ||||| || | |||||||| |||||||| || ||||| || | Sbjct 5194866 CGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 5194925 Query 43174 AGATTTGCATTTTT 43187 || | || ||| || Sbjct 5194926 AGCTGTGAATTCTT 5194939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817535670520