Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 123 2e-23 seq1 102 7e-17 >seq2 Length=5498963 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || | ||||| | ||||| ||||| || Sbjct 3944461 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACAATCACTCTAGAAGTCGAGTCATCC 3944520 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| ||||| || || ||| ||| ||| || ||||| || ||||| || |||| Sbjct 3944521 GACACCATCGA--CAATGTCAAGTCAAAGATCCAAGATAAAGAGGGTATTCCTCCAGACC 3944578 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | || || ||||| ||||| || ||||||| ||| ||| || || |||| Sbjct 3944579 AACAGCGATTGATCTTCGCCGGTAAACAGTTGGAAGATGGTCGGACTCTGTCAGACTACA 3944638 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| || || || || || ||| | ||||| || || |||| || Sbjct 3944639 ACATTCAGAAGGAGTCTACTCTTCATCTCGTGCTCAGACTGCGAGGTGG 3944687 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || | || || | ||||| || ||||| Sbjct 3944689 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACTATTACTCTAGAAGTCGAATCGTCC 3944748 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| ||| ||| |||||||| || || |||||||| || Sbjct 3944749 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3944808 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||||||||| ||||||| ||| ||| | ||| ||||| Sbjct 3944809 CAGCGATTGATCTTTGCAGGCAAACAATTGGAAGATGGTCGAACTCTTTCCGACTACAAC 3944868 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||| || ||| || ||||| ||| | || || Sbjct 3944869 ATCCAAAAGGAGAGCACCCTGCATTTGGTGTTGAGACT 3944906 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| || ||||||| ||||||||||||| Sbjct 3944233 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAAGTGGAGTCTAGC 3944292 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || || | ||| | |||| ||| || || ||||| ||||| ||||| || Sbjct 3944293 GATACCATTGACAACGTTAAGTCCAAAATTCA-GGATAAGGAAGGCATTCCTCCTGATCA 3944351 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || || || || ||| | ||||| | |||||| || | || ||||| Sbjct 3944352 ACAGCGTCTCATCTTCGCTGGAAAGCAACTTGAAGACGGTCGCACCCTGAGTGACTACAA 3944411 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||| | || || Sbjct 3944412 CATCCAGAAGGAATCCACTCTCCATCTCGTCCT 3944444 >seq1 Length=6137194 Score = 102 bits (112), Expect = 7e-17 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||| || | || || ||||| | || || || ||||||| | || |||||||| Sbjct 5194939 AAGAATTCACAGCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTC 5194880 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||| ||||| ||||| || || ||| || ||| ||||| ||||| ||||| || Sbjct 5194879 GTCCGACACCATCGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATTCCTCCG 5194822 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||||| | || |||||||| || || | ||||||| ||||| | ||||| Sbjct 5194821 GACCAGCAGCGATTGATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACCCTCAGCGAT 5194762 Query 25173 TACAATATTCAAAA 25186 ||||| || ||||| Sbjct 5194761 TACAACATCCAAAA 5194748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327952469335