Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6 235 6e-57 seq2 114 1e-20 >seq6 Length=3112757 Score = 235 bits (260), Expect = 6e-57 Identities = 522/771 (68%), Gaps = 14/771 (2%) Strand=Plus/Minus Query 53174 GAGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGG---TGACGACTAC 53230 |||| || || ||||| ||||||| || ||| |||| || ||||| ||||| | | Sbjct 986648 GAGAGACCACAACATCTTCTCATGCGTGTGGCCGTGGGCATTCACGGCAATGACGTCGAG 986589 Query 53231 ACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCA 53290 | | | | |||||| ||| || | ||| ||| |||| ||| || || ||| ||||| Sbjct 986588 AAG---GCCATTGAGACATACAACCTCATGTCCCAGAAGTGCTTCACTCATGCCTCGCCA 986532 Query 53291 ACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATG 53350 ||||| ||||||||||| || ||| || ||| |||| ||||||| || | | ||| Sbjct 986531 ACCCTTTTCAACGCTGGCACTCCTCAACCCCAGTTGTCATCCTGCTTCTTGATTGACATG 986472 Query 53351 AAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAG 53410 ||| ||| || || |||||||| || || |||||| ||||| ||||||||| Sbjct 986471 AAGTCCGACAGCATTGAAGGCATCTATGATACTCTCAAGACCTGTGCAATGATCTCCAAG 986412 Query 53411 TGGTCGGGTGGTATCGGTATCCACTGCTCGAA-CGTCCGTGCGAACGGCACACCAATCAA 53469 | || ||||| ||| || || |||| | | ||||| | ||| | ||| Sbjct 986411 ACCGCCGGCGGTATTGGTCTCAAC-GCTCATTGCATTCGTGCCACTGGCTCCTATATCGC 986353 Query 53470 GGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGC 53529 || || |||||| | | || || | || ||||| | |||||||||||||| || Sbjct 986352 CGGAACCAACGGCACATCAAACGGCCTCATCCCCATGCTTAGAGTCTTCAACAACACTGC 986293 Query 53530 CCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCC 53589 || |||||| ||||||| || ||||| || | || ||||| ||| | ||||| Sbjct 986292 TCGCTACGTCGACCAGGGAGGCAACAAGCGGCCCGGTGCCTTTGCCATTTACTTGGAGCC 986233 Query 53590 GTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT 53649 ||||||||||| | | |||| || | ||| | ||| || || | ||||| | Sbjct 986232 ATGGCACGCCGATGTCTTCGAGTGGCTGAACCTGAGAAAGAACCATGGCAAGGAAGAAGT 986173 Query 53650 GCGCTGC-CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG 53707 || ||| ||||||||||| ||| || ||||||| || || ||||||||||| || Sbjct 986172 TCG-TGCTCGTGACCTGTTCTAC-GCCCTGTGGACACCCGATCTCTTCATGCAGCGTGTT 986115 Query 53708 GAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTC 53767 |||||| || |||| ||| ||| | ||||| |||||| || || ||| | ||| Sbjct 986114 GAGAAGAACCAGGATTGGACCCTTTTCTGCCCCAACGAGGCTCCTGGTCTCGCTGATGTT 986055 Query 53768 TACGGTGAGGAGTTTAACGAGATGTATCGGAC-GTACGCAGTTCAGGGCCGCTACAAGAA 53826 || || ||||||| | | | || || || ||||| | |||||| | Sbjct 986054 TATGGCAAGGAGTTCGAAGCCCTTTA-CGAACAGTACGAGAAAGAAGGCCGCGGTCGCCA 985996 Query 53827 GAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAAC 53886 || ||||| || | || | ||| | || || ||| || ||| ||||| || || Sbjct 985995 GACTGTCAAAGCCCAGAAGCTCTGGTACGCCATTCTCGAGGCACAGACCGAGACCGGTAC 985936 Query 53887 GCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 || || ||| ||||||||| | |||||||||||||||||||||||| Sbjct 985935 CCCTTATATGCTGTACAAGGATGCCTGCAACGAGAAGAGCAACCAGAAGAA 985885 Score = 100 bits (110), Expect = 3e-16 Identities = 306/461 (66%), Gaps = 39/461 (8%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || |||||||| || ||||| |||||||| | |||||| Sbjct 985358 CGCAACTCTCTTCTCGTTGCACCCATGCCAACTGCATCGACCTCTCAGATCCTTGGCAAC 985299 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| |||||||| ||||| ||||||||||| ||||| | | || |||||| Sbjct 985298 AATGAGTGCTTCGAGCCATACACCTCCAACATCTACTCTCGCCGTGTCTTGGCTGGTGAG 985239 Query 55604 TTTGTCATGATCAAC------------AAGCACCTCGTCAAGGACCTGCAGAAGATCAAC 55651 || | ||||| ||| |||||||| ||||| | || | Sbjct 985238 TTCCAAGTCGTCAACCCATGGCTTCTGAAGGACCTCGTC---GACCT-CGGACTTT---- 985187 Query 55652 AAGTGGAACCCGCAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAAT- 55708 || | || | || |||| || || | ||| ||| || || ||||| || ||| Sbjct 985186 -GGTCGGAC---AACATGAAGAACCGTATCAT-TGCCGAA-GGTGGCTCCGTTCAAAATA 985133 Query 55709 --CTGGAGATTCCTCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGA--TTCCAC 55763 | | ||||| | || |||||||| | ||| ||| || ||||| | | ||| Sbjct 985132 TCCCCAACATTCC-CGCCGATCTCAAGGCACTCTACAAGACTGTCTGGGAAATCTCCCAG 985074 Query 55764 AGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTC 55823 | | |||| | | ||| || || || ||||| | ||| || ||||| || || Sbjct 985073 CGCACAGTC--CTGCAGATGGCGGCCGACCGAGGTGCCTTCATTGATCAGTCGCAATCAT 985016 Query 55824 TGAACAT-CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGG 55882 ||||||| | || | ||| || || ||| |||| | | || ||||| ||| || Sbjct 985015 TGAACATCCATCTTAAAGAGCCCACCA-TGGGCAAGATTACATCCATGCATTTTGCTGGC 984957 Query 55883 TGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 ||||||| ||| |||||||| || ||||||||||| || || Sbjct 984956 TGGAAGATGGGTCTCAAGACTGGCATGTACTATCTCCGCAC 984916 >seq2 Length=5498963 Score = 114 bits (126), Expect = 1e-20 Identities = 201/289 (70%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| ||| || | ||| | ||||| | || |||||||| ||| Sbjct 2339422 GTGAAAATATAACGAGCGCTGGCGGAATCACTACCACCTTGATTTCGAGTACCGAACTGT 2339363 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||||||| | || | ||||| | ||||||||| | || ||||| ||| Sbjct 2339362 CCGGAGGGCTCCAACAAATTGACATTGTTTGAACCCACAAAGGTCTGTGCCAAACCAACA 2339303 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTC-TGCTCCGCCACGTAG-C 117482 || || ||| || |||| ||||||||||| || ||| || || ||| ||| | Sbjct 2339302 ATGGTTTGTTGCAGAGAGACCTCGCCATGGTGATATGCTGTCATG--CCACCAATTAGAC 2339245 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | || || | |||||||||||| || | | || || ||| | ||||| || || | Sbjct 2339244 CAGCAAGTTCAGCCACCTTCATATCCTTCCTGAGATTGCGCTTAAAGCAGGTGTACATGA 2339185 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACG 117591 |||||||||||| ||||| || ||||| ||| |||||| || || Sbjct 2339184 CCTTGCGCTGACCGGGCTTGAGCCCATCAATCACCGAAGGGATAGATCG 2339136 Score = 104 bits (114), Expect = 3e-17 Identities = 247/362 (68%), Gaps = 11/362 (3%) Strand=Plus/Minus Query 152758 ACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTC 152817 || || || | ||||| | ||| || ||||| || ||| || ||||| || ||| Sbjct 2338693 ACTTGTAAAAAGTTGATCAACAACCCTTTGATATGACTTCCATCGTGATCCTGATCAGTC 2338634 Query 152818 ATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGAC-CCGTAGACCTTTCCATGTTG 152876 |||||||||| | ||||||| || ||| | | |||| | ||||||||| ||||| Sbjct 2338633 ATGATCATCAAATGACCGTAACGAAGGCCTTG-AGTGTCGGTGTAGACCTTCTTGTGTTG 2338575 Query 152877 AAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGT 152936 || || |||| || |||| ||| || || |||| | || | || | || | Sbjct 2338574 GAGACCAAGGAAATTCTTGATGTTCTGAATCTCTGCATTCTTGGAGATTTGATCGACAGA 2338515 Query 152937 GGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG-C 152995 |||||| ||||||||| || |||||| || || || || || || ||| | | ||| | Sbjct 2338514 GGCATCACGAACATTGAGCAACTTTCCACGAAGCGGGAAAACTCCAAAC-AGATCCGGAC 2338456 Query 152996 CTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAA 153055 | |||||| |||| || || ||||| |||| || || ||||| || || | || | Sbjct 2338455 CAACAACGGAACGACCTGCCATGGCAAGACCTTTGGCTGAATCACCTTCAGTAAGGATCA 2338396 Query 153056 GCGTACAGTCGTGAGAC--CGATGAGTACCGGCCCAGTTGGCGTC-GTCAAGCTTGGGGA 153112 ||||| | ||| | | | || || ||||| ||||||||| ||||| || |||| Sbjct 2338395 AGGTACATTTGTG-GCCTTCTCTG-GTCCCGGCTTTGTTGGCGTCGGTCAA--TTTGGGA 2338340 Query 153113 TT 153114 || Sbjct 2338339 TT 2338338 Score = 93.3 bits (102), Expect = 5e-14 Identities = 272/414 (66%), Gaps = 4/414 (1%) Strand=Plus/Minus Query 151865 AGCAGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAG 151924 || |||| | ||||| || ||||| || || ||||||| |||| || ||||| | || Sbjct 2339586 AGGAGCTCCAACCGGTGCCAATGCCATCAGCCCCGTTGATGAGAACCAGAGGCACGACAG 2339527 Query 151925 GGGCGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAAT 151984 | |||| | || || || | | | | ||||| || ||| |||| | | | Sbjct 2339526 GAACGTAGATGTCGGGTTCAATGGGCTTGTCATCATCTGTCTGGTACTTCAGCAGAGGCT 2339467 Query 151985 TGTCAGCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGG 152044 || || ||| || | | |||| | ||| ||| | ||||| || || || | Sbjct 2339466 CATCTGCTTGATGAAAGAGCTTGCGAGCAAAAGGTGACAATCTGGTGAAAATATAACGAG 2339407 Query 152045 AGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGA 152104 |||||| | ||| | |||||| || || || |||||||| |||||||| | | Sbjct 2339406 CGCTGGCGGAATCACTACCACCTTGATTTCGAGTACCGAACTGTCCGGAGGGCTCCAACA 2339347 Query 152105 GGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGAC 152164 |||| ||||| | ||||| || |||| |||||| ||||| || |||||| Sbjct 2339346 AATTGACATTGTTTGAACCCACAAAGGTCTGTGCCAAACCAACAATGGTTTGTTGCAGAG 2339287 Query 152165 TCGCTTCACCGTGGTGATACGCCGTC-TGCTCCGCGATGTATCCCGCCAACTGC-GCCAC 152222 | || || |||||||| || ||| ||| | | || || || ||| | | ||||| Sbjct 2339286 AGACCTCGCCATGGTGATATGCTGTCATGCCAC-CAAT-TAGACCAGCAAGTTCAGCCAC 2339229 Query 152223 CTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTG 152276 |||||| ||| || | || || ||| | |||| ||| || ||||||||||| Sbjct 2339228 CTTCATATCCTTCCTGAGATTGCGCTTAAAGCAGGTGTACATGACCTTGCGCTG 2339175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215938438200