Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 185 8e-42 seq1 91.5 1e-13 >seq2 Length=5498963 Score = 185 bits (204), Expect = 8e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| |||||| |||||||||| ||||| ||| ||||| Sbjct 3944689 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACTATTACTCTAGAAGTCGAATCGTCC 3944748 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || ||||||||||| || || ||||| ||||| Sbjct 3944749 GACACCATCGACAACGTCAAGTCAAAGATCCAAGACAAAGAGGGTATCCCACCTGATCAG 3944808 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | || ||||||||||||||||| || || ||||||| |||||| Sbjct 3944809 CAGCGATTGATCTTTGCAGGCAAACAATTGGAAGATGGTCGAACTCTTTCCGACTACAAC 3944868 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||| ||| | |||||||| ||| | |||| ||||| Sbjct 3944869 ATCCAAAAGGAGAGCACCCTGCATTTGGTGTTGAGACTGCGTGGTGG 3944915 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || ||||| ||||| || | ||| Sbjct 3944461 ATGCAAATCTTCGTCAAGACCCTCACAGGCAAGACAATCACTCTAGAAGTCGAGTCATCC 3944520 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || ||||| ||||| || || || || || ||| Sbjct 3944521 GACACCATCGACAATGTCAAGTCAAAGATCCAAGATAAAGAGGGTATTCCTCCAGACCAA 3944580 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | |||||| ||||| |||||||| || ||| | || || |||||| Sbjct 3944581 CAGCGATTGATCTTCGCCGGTAAACAGTTGGAAGATGGTCGGACTCTGTCAGACTACAAC 3944640 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | ||| | || | | |||| ||||| || Sbjct 3944641 ATTCAGAAGGAGTCTACTCTTCATCTCGTGCTCAGACTGCGAGGTGGTAT 3944690 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| ||| | || || || |||||||| | | Sbjct 3944233 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACCATCACCCTCGAAGTGGAGTCTAGC 3944292 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || |||||||| || || |||||||| || || |||||| Sbjct 3944293 GATACCATTGACAACGTTAAGTCCAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAA 3944352 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || ||| | |||||| || ||| | || |||||| Sbjct 3944353 CAGCGTCTCATCTTCGCTGGAAAGCAACTTGAAGACGGTCGCACCCTGAGTGACTACAAC 3944412 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||| | || | || | || ||||| || Sbjct 3944413 ATCCAGAAGGAATCCACTCTCCATCTCGTCCTCCGCCTCCGTGGTGGTAT 3944462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| ||| | || || ||||| ||||| | |||| | ||||| | ||||| Sbjct 3944027 TGACCGGAAAGACCATCACCCTTGAGGTGGAGTCCAGCGACACCATTGACAATGTCAAGT 3944086 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || || || || || |||||||| || || ||||| || || | || | ||| || | Sbjct 3944087 CCAAGATCCAGGATAAGGAAGGCATTCCTCCTGATCAGCAACGCCTTATCTTCGCTGGAA 3944146 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | || || | ||| | |||||||||||| |||||||| || ||||| | Sbjct 3944147 AGCAACTCGAGGATGGCCGCACCCTAAGCGATTACAACATCCAAAAGGAATCTACCTTGC 3944206 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | ||| | || ||||| || Sbjct 3944207 ATCTTGTCCTTCGTCTCCGTGGTGGTAT 3944234 >seq1 Length=6137194 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 27076 TTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAAT 27135 ||| |||||| || ||||| ||||| || || || ||| | || | ||||||||| ||| Sbjct 441014 TTCTAGACAAGGAGGGCATCCCACCTGACCAGCAACGTCTGATCTTCGCCGGCAAGCAAC 441073 Query 27136 TGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGG 27195 | || ||| | ||| | || || |||||||| || |||||||||||| | || |||| Sbjct 441074 TCGAGGACGGCCGAACCCTGTCTGACTACAACATCCAGAAGGAGTCGACCCTGCACTTGG 441133 Query 27196 TTTTGCGTTTGCGGGGTGGC 27215 | | ||| | || |||||| Sbjct 441134 TCCTTCGTCTTCGTGGTGGC 441153 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| | || || ||||| ||||| |||||||| | || Sbjct 5194926 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATC 5194867 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| ||||| || || || || || ||||| || Sbjct 5194866 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGAATTCCTCCGGACCAGCAGCGATTG 5194807 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||| || || | ||||| | ||| | |||||||||||| |||||| Sbjct 5194806 ATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGCACCCTCAGCGATTACAACATCCAAAAG 5194747 Query 27177 G 27177 | Sbjct 5194746 G 5194746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918351071680