Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20mesophila_20[genbank_20GCA_5F000836275.1_202015-02-23] 9 sequences; 29,273,723 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2 190 4e-43 seq1 134 3e-26 seq3 87.8 4e-12 >seq2 Length=5498963 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| | | |||| ||| | ||||| || ||||||||||||||||| | Sbjct 3944916 ACCACCACGCAGTCTCAACACCAAATGCAGGGTGCTCTCCTTTTGGATGTTGTAGTCGGA 3944857 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | |||||| || ||||||||||| || || || ||| || Sbjct 3944856 AAGAGTTCGACCATCTTCCAATTGTTTGCCTGCAAAGATCAATCGCTGCTGATCAGGTGG 3944797 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| |||||||||||||||| || ||| | ||||| ||||| || | |||||| Sbjct 3944796 GATACCCTCTTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGACGATTCGAC 3944737 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || ||||| || |||| || || ||||| |||||||| Sbjct 3944736 TTCTAGAGTAATAGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 3944689 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| ||||| | || || ||||| | || || || || ||||||||||| | Sbjct 3944688 ACCACCTCGCAGTCTGAGCACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 3944629 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || ||||| || | ||||| ||||| |||||||| || |||||||| || Sbjct 3944628 CAGAGTCCGACCATCTTCCAACTGTTTACCGGCGAAGATCAATCGCTGTTGGTCTGGAGG 3944569 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||| || ||||||||||||| || || | ||||| ||||| || | ||||| Sbjct 3944568 AATACCCTCTTTATCTTGGATCTTTGACTTGACATTGTCGATGGTGTCGGATGACTCGAC 3944509 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| ||||| || || | ||||| ||||| || ||||| Sbjct 3944508 TTCTAGAGTGATTGTCTTGCCTGTGAGGGTCTTGACGAAGATTTGCAT 3944461 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || ||||| | ||| ||| || ||||||||||||||| Sbjct 3944460 ACCACCACGGAGGCGGAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCACT 3944401 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| || || || ||||| || || || ||||| | ||| ||||| ||| || Sbjct 3944400 CAGGGTGCGACCGTCTTCAAGTTGCTTTCCAGCGAAGATGAGACGCTGTTGATCAGGAGG 3944341 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || || || || | || ||| | || || || || || || || Sbjct 3944340 AATGCCTTCCTTATCCTGAATTTTGGACTTAACGTTGTCAATGGTATCGCTAGACTCCAC 3944281 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| ||||| ||||| || || | |||||| ||||| || ||||| Sbjct 3944280 TTCGAGGGTGATGGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 3944233 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| || ||||| || || ||| |||||||||||||| || Sbjct 3944232 ACCACCACGGAGACGAAGGACAAGATGCAAGGTAGATTCCTTTTGGATGTTGTAATCGCT 3944173 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| ||||| || || || ||||| | ||||| || ||| || Sbjct 3944172 TAGGGTGCGGCCATCCTCGAGTTGCTTTCCAGCGAAGATAAGGCGTTGCTGATCAGGAGG 3944113 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| | || || | || || ||||| | || || Sbjct 3944112 AATGCCTTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTGTCGCTGGACTCCAC 3944053 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 3944052 CTCAAGGGTGATGGTCTTTCCGGTCA 3944027 Score = 84.2 bits (92), Expect = 5e-11 Identities = 219/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 274473 AGCAGACTGGGGAAACA-ACTATGGAAAAAGTTCATGACAAGACCTGATATGTGAGTTCC 274531 || ||||| ||||| ||| || |||||||| || | | ||| || ||| |||| Sbjct 2338711 AGGAGACTAGGGAACTGGACT-TGTAAAAAGTTGATCAACAACCCTTTGATATGACTTCC 2338653 Query 274532 GTCAACGTCGGCATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTT 274591 || || ||| ||||||||||| | ||| || || ||||| ||| || | Sbjct 2338652 ATCGTGATCCTGATCAGTCATGATCATCAAATGACCGTAACGAAGGCCTTGAGTGTCGGT 2338593 Query 274592 ATACAACTTCCCTGT-TTGAAGCCCAAGAATTTGCTTGA-GAGCGGTGATTTCTTCGTTC 274649 || | ||| | ||| ||| || ||||| | | ||||| | | | || ||| | ||| Sbjct 2338592 GTAGACCTT-CTTGTGTTGGAGACCAAGGAAATTCTTGATGTTCTG-AATCTCTGCATTC 2338535 Query 274650 TTTGTGATACTCGCCACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAA 274709 || | ||| | ||||| |||||||| || || |||||||| || || || |||||| Sbjct 2338534 TTGGAGATTTGATCGACAGAGGCATCACGAACATTGAGCAACTTTCCACGAAGCGGGAAA 2338475 Query 274710 ACGCCATACCTTTCGCGCCCGATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAA 274769 || ||| || || | || | || ||| |||| || || || ||| | |||||| Sbjct 2338474 ACTCCAAACAGATCCGGACCAACAACGGAACGACCTGCCATGGCAAGACCTTTGGCTGAA 2338415 Query 274770 TCTCCCTCTGTGAGAATCAAAGTACA 274795 || || || || || ||||| ||||| Sbjct 2338414 TCACCTTCAGTAAGGATCAAGGTACA 2338389 >seq1 Length=6137194 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 |||||||||||||| || || ||||||||||| || || || || |||||||||||| Sbjct 5194748 TTTTGGATGTTGTAATCGCTGAGGGTGCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATC 5194807 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 || || || ||||| ||||| || ||||||||||||||||| | || || | ||| Sbjct 5194808 AATCGCTGCTGGTCCGGAGGAATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCG 5194867 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| || | || || || || ||||| ||||| ||||| | ||||| ||||| Sbjct 5194868 ATGGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 5194926 Score = 109 bits (120), Expect = 1e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||| || | || || || |||||||||||||||| Sbjct 441152 CCACCACGAAGACGAAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAC 441093 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || ||||| ||||| ||||| || ||||| ||||||| |||||| |||||| || Sbjct 441092 AGGGTTCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCAGGTGGG 441033 Query 282993 ATACCCTCCTTGTCT 283007 || |||||||||||| Sbjct 441032 ATGCCCTCCTTGTCT 441018 >seq3 Length=5104443 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222 ||| |||| || | ||||| | || || || ||| | ||| ||| |||| || | Sbjct 4691639 ATCATCACTGAGGCCGTTGCCATCGAGAAAGAATTCTTGACCGATGCTCTTCCCTGTGCT 4691580 Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282 ||| | |||||||| || | || ||| || |||||||| ||||| || || ||| | Sbjct 4691579 CTTCTTGGCATGAACGCCAAGCTGATGCAACAGTATATCGAGTTCGTCGCCGACCGTCTG 4691520 Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342 || |||| | || || || || || ||| | | ||||||||| || |||||| Sbjct 4691519 CTCCTGGCCATGGGAAACAAGCGCGTCTACAACGCAACTAACCCCTTCAGCTTCATGGAG 4691460 Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402 ||| || || || || || ||||||||||| ||||| || | || ||||| | | Sbjct 4691459 AACATCTCCCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGAGTGGGTGACTATCAGAAG 4691400 Query 230403 CCCGGTGT 230410 | ||||| Sbjct 4691399 GCTGGTGT 4691392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739079297886