Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq1 104 2e-17 seq3 89.7 4e-13 seq4 87.8 2e-12 >seq2 Length=4294494 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 134118 TGATTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAA--T 134175 || || |||| || || |||||||| ||||| ||| ||||||| || | | ||| | Sbjct 1336749 TGGTTCTTCTCAACACGCTTCATGAAAAGATCAGGAGTCCACAG--CGCGTAGAAAAGGT 1336806 Query 134176 CGCGAGCTTTAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTT 134235 | ||||| ||||| ||| ||| ||||||||| | ||| ||| | | | Sbjct 1336807 CACGAGCACGGACTTCTTCTTTGCCGTGGTTCTTTCTCAAGTTCAAAAAGTCAAAGACAT 1336866 Query 134236 CCGGATGCCACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTTA---CCACCCTGGT 134292 | | |||||| ||||||| |||| ||||| ||||||| ||||| |||||||||| Sbjct 1336867 CTGCATGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGT 1336926 Query 134293 CGACGTGACGCACCATGTTGTTGAAGACTCTCAACATATTGACGAGACC 134341 |||| | ||| | |||||||||||||||| | ||| || |||||| Sbjct 1336927 CGACATAACGGGCAGTGTTGTTGAAGACTCTGAGCATTGGGATGAGACC 1336975 >seq1 Length=4470873 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| ||||||||||| || | |||||| ||| || | ||||| || Sbjct 3798046 GTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTGCCT 3797987 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | || ||||| |||||||| |||||||||||||| ||| || || Sbjct 3797986 GCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTT 3797927 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | || ||||||| ||| | || ||||||||||| || Sbjct 3797926 ACATTGTCGATGGTATCAGACGATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 3797867 Query 118722 TTTACAAAAATCTGCAT 118738 || || ||||| ||||| Sbjct 3797866 TTGACGAAAATTTGCAT 3797850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || |||||||| || ||||| ||||||| ||||| ||| || | Sbjct 3797829 CAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCATCTTCAA 3797770 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | || ||||| ||| |||| |||||||||||||| ||||| || || |||||||| Sbjct 3797769 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTC 3797715 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || |||||||||| || | || | || || || || || ||||||||||| Sbjct 3798306 TACCACCTCGTAATCTCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTG 3798247 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || || || || || ||| |||| | || |||||||| || | Sbjct 3798246 AGAGAGTTCGACCGTCTTCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGG 3798187 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||| |||||| |||||| || || | || | |||||| | | |||| Sbjct 3798186 GGATACCCTCTTTGTCTTGAATTTTGCTCTTCACATTGTCAATGGTGTCAGAGGATTCGA 3798127 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | || | |||||||| || || || || ||||| || ||||| Sbjct 3798126 CTTCCAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACAAAGATTTGCAT 3798078 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||| | ||||||||| | || || ||||| |||||||| || Sbjct 3798533 ACCACCACGAAGTCTTAGCACCAAGTGCAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGA 3798474 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || || || |||||| | ||| || || || |||| | ||||| || || || || Sbjct 3798473 CAGCGTCCGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGG 3798414 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || |||||||||||| ||||| || || | |||| ||||||| ||| || Sbjct 3798413 AATACCCTCCTTGTCTTGGATTTTGCTCTTGACGTTGTCGATAGTGTCCGACGACTCAAC 3798354 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | || || || |||| ||| || || || |||||||| Sbjct 3798353 TTCAAGGGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 3798306 >seq3 Length=4123400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 |||||||||||||| ||||| | ||| || ||||||||| || ||||| || |||| Sbjct 1163294 TTTTGAATGTTGTAGTCGCTAAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATC 1163235 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 | || ||||| || || || || || ||||||||| || || || || | ||| Sbjct 1163234 AATCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCG 1163175 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | |||||| | ||| ||||||| ||| | || ||||| || || || || || || Sbjct 1163174 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 >seq4 Length=3720747 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| ||| | ||||| ||||||||||| Sbjct 362436 TGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 362495 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||| |||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 362496 TTTCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATTCCTTCCTTGTCTGT 362548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829643914956