Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23]
143 sequences; 38,224,514 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 1e-15
>seq1
Length=4470873
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||||||| | || || | ||||| || ||||| || || ||||||||||| |
Sbjct 3798304 CCACCTCGTAATCTCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATC--TG 3798247
Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| | | |||| |||||| ||||| || || || |||||| ||||||||||| || |
Sbjct 3798246 AGAGAGTTCGACCGTCTTCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGG 3798187
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || || |||||||| |||||| || | | || | ||||| | || ||| |
Sbjct 3798186 GGATACCCTCTTTGTCTTGAATTTTGCTCTTCACATTGTCAATGGTGTCAGAGGATTCGA 3798127
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|||| | || | || ||||| || | || || || || |||||||||
Sbjct 3798126 CTTCCAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACAAAGATTTGCATA 3798077
Score = 89.7 bits (98), Expect = 5e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041
|||| || || ||||| || |||||||| || | |||| ||||| | ||||
Sbjct 3798052 TGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTGCGGCCATCTTCTAATTGT 3797993
Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101
|| || ||| |||||| |||||||| |||||||| ||||| || ||||| ||| ||
Sbjct 3797992 TTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTG 3797933
Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161
|||| | || | || || | | ||| || || | || | ||||||||||||
Sbjct 3797932 CTCTTTACATTGTCGATGGTATCAGACGATTCAACCTCGAGGGTGATGGTCTTGCCGGTC 3797873
Query 143162 AATGTTTTTACGAATATTTGCATA 143185
| || || ||||| |||||||||
Sbjct 3797872 AGGGTCTTGACGAAAATTTGCATA 3797849
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047
|| ||||||||||| || ||||| ||||||| |||| ||||| ||||| || ||
Sbjct 3797818 GTTGATTCTTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCATCTTCAAGTTGCTTTCCT 3797759
Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107
|| |||| ||||| |||||||| ||||| || ||||| ||||| || || ||
Sbjct 3797758 GCGAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGACTTG 3797699
Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160
| | || | ||| || ||| ||| || |||| ||| | ||||| |||||
Sbjct 3797698 ACGTTGTCGATCGTATCACTGGATTCGACCTCAAGAGTGATGGTCTTTCCGGT 3797646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507013493711760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |