Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq2 109 5e-19 seq3 96.9 3e-15 seq1 95.1 1e-14 >seq4 Length=3720747 Score = 118 bits (130), Expect = 1e-21 Identities = 109/138 (79%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | ||| | |||||||||||| || |||||||| ||| Sbjct 362412 CCACCACGCAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 362471 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| | ||| |||||||| || ||| Sbjct 362472 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 362531 Query 131128 ATTCCTTCTTTGTCGGTG 131145 |||||||| ||||| ||| Sbjct 362532 ATTCCTTCCTTGTCTGTG 362549 >seq2 Length=4294494 Score = 109 bits (120), Expect = 5e-19 Identities = 287/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| || || || || ||||| ||||| || |||| | ||| || ||| | || Sbjct 1335870 TTGACGACTTGGAATTCACCAGCCAATACACGTCGAGAATAGATGTTGGATGTGTATGGC 1335929 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| | ||||| || |||| ||| || | |||| ||| || ||||| || || Sbjct 1335930 TCAAAGCATTCGTTGTTACCCAAGATCTGGGAAGTCGATGCAGTAGGCATAGGAGCGACA 1335989 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | |||||||| || ||| | || || | |||| ||||| Sbjct 1335990 AGAAGGGAGTTGCGGATACCGTGCTTAGCAATTTCTGCTTTCAGGCCATCCCAGTCCCAG 1336049 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || || | || | ||||||||| || || | ||||||| | | |||||| Sbjct 1336050 AGGTCAGAAGGAGTGACATTCCACATGTCATATTGAAGGATGCCCTGTGAGACTGGGCTG 1336109 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | | ||| ||| |||| ||| ||||||||||||||| || || | Sbjct 1336110 CCCTCATAGGTTTCATAAGTGCCTT--GTTCCTTGGCGAGCTCGCAAGATGCTGTCAATG 1336167 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || ||||| || || |||||||| | | ||||| ||| Sbjct 1336168 CGGCGTGGTAGATGGTCTCAAAGATCTGGATGTTGAGCTGTCTGGCTTCTGGAGAGTCGA 1336227 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 | |||| || || | ||||||||||| || || || | || | |||| || | Sbjct 1336228 AAGGCAGACGTAGTGCCAGGAAAGCATCGGCAAGACCTTGGACACCAAGACCGACAGGTC 1336287 Query 145476 GATGTTTCATGTTGCT 145491 ||||| |||||||||| Sbjct 1336288 GATGTCTCATGTTGCT 1336303 Score = 84.2 bits (92), Expect = 2e-11 Identities = 203/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 146209 GCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAG 146268 ||| ||| |||| | || | |||||| || |||||| || || ||| ||| Sbjct 1337024 GCAGTGAGCATTGAGACCAATACCGCCAGCGGTCTTGGAGATCATAGCACAGGTCTTGAG 1337083 Query 146269 CGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCAC 146326 || || ||||| || |||||||| || |||| ||| | | | ||||| || || Sbjct 1337084 TGTGTCATAGATACCTTCAATGCTGTCCTCCTTC--ATGTCAATTAAGAAGCATGAAGAC 1337141 Query 146327 ATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA-CATTTT 146385 | || | | ||||| || || ||||| ||| || ||||| ||||| || || Sbjct 1337142 AATTGAGGCTGAGGCGTTCCAGCATTGAACAGCGTAGGAGAGGCGTGAGTAAAGCACTTC 1337201 Query 146386 TCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAA 146445 | | ||| | || || ||||| || | | || ||| ||||||||||| || | Sbjct 1337202 TGAGA-CATGAGGTTGTAAGTCTCGATGGCCTTCTCAACGTCATCGCCATGAATACCGAC 1337260 Query 146446 AGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAA 146505 || || ||||| ||||||||||| || || || || ||||| ||| | ||||| | ||| Sbjct 1337261 AGACACACGCATCAGCATGTGTTGTGGTCGTTCAGCAACTTGCTTGCCGATCTTGAGCAA 1337320 Query 146506 ATA 146508 ||| Sbjct 1337321 ATA 1337323 >seq3 Length=4123400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||||||||||||||| ||||| | || || ||||| || ||||| || || ||| Sbjct 1163296 CCTTTTGAATGTTGTAGTCGCTAAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGA 1163237 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | || || |||||||| || ||||||||||| ||||| ||| || ||||| | | Sbjct 1163236 TCAATCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGT 1163177 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| ||||| | |||| ||| | ||| || || || || || || |||| Sbjct 1163176 CGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 1163117 Query 131225 A 131225 | Sbjct 1163116 A 1163116 >seq1 Length=4470873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || || | ||| || | ||| | || || ||||| || ||||||||||| Sbjct 3798304 CCACCTCGTAATCTCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGAG 3798245 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| ||||| |||||||||||| |||| || || ||||| ||||| ||| Sbjct 3798244 AGAGTTCGACCGTCTTCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGGGG 3798185 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||||| ||| | | || | || || | ||| |||| Sbjct 3798184 ATACCCTCTTTGTCTTGAATTTTGCTCTTCACATTGTCAATGGTGTCAGAGGATTCGACT 3798125 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || || || || || || || ||||| Sbjct 3798124 TCCAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACAAAGATTTGCAT 3798078 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 |||||||| |||||||| || || || || ||||| | |||||||||||| || Sbjct 3798496 TCCTTTTGGATGTTGTAGTCAGACAGCGTCCGGCCATCCTCCAACTGCTTGCCTGCAAAG 3798437 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGC 131163 || || ||||| ||||| || || || || || ||||| |||||| ||||| | Sbjct 3798436 ATCAATCGCTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGGATTTTGCTCTTGACGTTG 3798377 Query 131164 TCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACG 131223 || | ||| || | ||||| | || | ||||| || || || || | ||| || ||| Sbjct 3798376 TCGATAGTGTCCGACGACTCAACTTCAAGGGTAATTGTCTTTCCAGTCAAAGTCTTGACG 3798317 Query 131224 AAAATCTGCAT 131234 || |||||||| Sbjct 3798316 AAGATCTGCAT 3798306 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| || || | || | ||| ||||| || ||||||||||| || Sbjct 3798076 CCGCCGCGAAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAA 3798017 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || |||| || |||||||| |||| || || |||||||| ||||| Sbjct 3798016 AGAGTGCGGCCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGA 3797957 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | || | ||||| | || || | Sbjct 3797956 ATGCCCTCCTTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGACGATTCAACC 3797897 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || ||||| || || || |||||||| ||||| Sbjct 3797896 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3797850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011956277120