Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5 100 6e-16 seq3 91.5 3e-13 >seq5 Length=3385568 Score = 100 bits (110), Expect = 6e-16 Identities = 165/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || || ||||| || ||||||||||||||| |||| | | | ||||| || || Sbjct 525594 GTCGGCTCACTGTCTGGCGGTTGGAAGATGAAGTTGGCTTTGGCCAGAGCCATGCTCATG 525653 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | |||||||| || ||||||||||| || ||||| || | ||| | ||||||| Sbjct 525654 AGAGCCGATGTTCTCCTGCTTGATGAACCTACCAATCATCTCGACGTCGCCAACGTCAAG 525713 Query 279816 TGGCT---AGTGT-CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||| || || || | || || |||| ||| | |||| | || || ||||| Sbjct 525714 TGGCTTGAAGAGTATCTGCAAAAACATTCTG-AGA---TCACTTCATTGATCGTGTCTCA 525769 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAA 279925 |||||| || || || |||||||| || | | ||| |||| || ||||| || Sbjct 525770 CGACTCCGGATTTCTGGATGCCGTCTGTACCGACATTCTTCATTACGAGCAGAA 525823 >seq3 Length=4123400 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 |||||||||| || || ||||| ||||| || || ||||| |||| | | || Sbjct 3285277 CTCACTCTCGTATGCGTGGTCTCTCTGGTGGTCAACGTGTCAAGGTTGTGCTTGCTGCTT 3285336 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 || | ||||||| |||||| ||||||| ||||||||||||||||||||||| ||||| Sbjct 3285337 GCACC-TGGCAACGACCTCACTTGATCGTCCTCGACGAGCCTACCAACTATCTCGACCGT 3285395 Query 280821 GAGAGCCTGGGCGCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATT 280880 || ||| || || || ||||| | || || | || || || || ||||| Sbjct 3285396 GACTCCCTCGGTGCCTTGTCCAAGGCTCTCAAGACCTTCGAAGGTGGTGTTGTCATCATT 3285455 Query 280881 TCTCACA 280887 ||||||| Sbjct 3285456 TCTCACA 3285462 Score = 84.2 bits (92), Expect = 4e-11 Identities = 92/120 (77%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 279702 TCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTG-C 279760 || || || ||||| |||||||||||| ||||||| |||| ||| | | | | | | Sbjct 3284235 TCGCTCTCTGGTGGCTGGAAGATGAAGTTGGCCCTGGCTCGTGCC-GTGTTCGAAGAGCC 3284293 Query 279761 CGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCT 279820 |||| | || |||||||| ||||| ||||||||| ||||| || ||||| |||||||| Sbjct 3284294 CGATATTCTTCTGCTTGACGAGCCCACCAACCACTTGGACGTCAAGAACGTTGCCTGGCT 3284353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027834916810263