Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 161 2e-34 seq3 138 2e-27 seq4 100 5e-16 seq2 91.5 3e-13 >seq1 Length=4470873 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || ||||||||||| || ||||| || || || Sbjct 3798076 CCGCCGCGAAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAA 3798017 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||||||||| || || || || || || | | ||| |||||||| ||| Sbjct 3798016 AGAGTGCGGCCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGA 3797957 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| ||| || |||||||| || | ||||| || Sbjct 3797956 ATGCCCTCCTTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGACGATTCAACC 3797897 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||||||||| || ||||| Sbjct 3797896 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3797850 Score = 158 bits (174), Expect = 2e-33 Identities = 178/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | || || ||||| | | |||||||| || ||| || ||||||||||| | Sbjct 3798540 TTTACTGACCACCACGAAGTCTTAGCACCAAGTGCAGAGTGCTTTCCTTTTGGATGTTGT 3798481 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || || || |||| ||||| || |||||||| || || || || | || ||||||| Sbjct 3798480 AGTCAGACAGCGTCCGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGGT 3798421 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCT 68405 | |||||||| || ||||||||||| || ||||| ||||||| ||||| ||||| | Sbjct 3798420 CAGGTGGAATACCCTCCTTGTCTTGGAT-TTTGCTCTTGACGTTGTCGATAGTGTCCGAC 3798362 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||| || || ||||| || | ||||||||||| |||||||| Sbjct 3798361 GACTCAACTTCAAGGGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 3798306 Score = 145 bits (160), Expect = 1e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| || || |||||||| ||||| ||||| || | || ||||||| ||| Sbjct 3798280 TGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGAGTTCGACCGTCTTCTAGTTGC 3798221 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | || ||| || || || || || || || ||||||||||| ||| Sbjct 3798220 TTGCCTGCGAAGATCAATCGTTGCTGATCCGGGGGGATACCCTCTTTGTCTTGAAT-TTT 3798162 Query 68379 GC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 || ||| || || |||||||| | ||||| ||||||| ||||| ||||| ||||| Sbjct 3798161 GCTCTTCACATTGTCAATGGTGTCAGAGGATTCGACTTCCAGTGTGATAGTTTTGCCCGT 3798102 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || ||||| Sbjct 3798101 AAGGGTCTTGACAAAGATTTGCAT 3798078 Score = 107 bits (118), Expect = 4e-18 Identities = 136/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||||||||| || || ||| || || | |||||||| | Sbjct 3797829 CAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCATCTTCAA 3797770 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 ||||| || ||||| || || | || || || || ||||| ||||||||||| || | Sbjct 3797769 GTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGA 3797710 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | ||||||| ||||| || || ||||| || || | |||||||| |||| Sbjct 3797709 TCTTGGACTTGACGTTGTCGATCGTATCACTGGATTCGACCTCAAGAGTGATGGTCTTTC 3797650 Query 68434 CCGTGA 68439 | |||| Sbjct 3797649 CGGTGA 3797644 >seq3 Length=4123400 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||| ||||| || ||| || || | ||||| || | ||||| ||||| || || Sbjct 1163294 TTTTGAATGTTGTAGTCGCTAAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATC 1163235 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | || ||| ||||| ||||| || |||||||||||||| ||||| | |||||| ||| Sbjct 1163234 AATCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCG 1163175 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || |||||||||||||||||||| Sbjct 1163174 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 >seq4 Length=3720747 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | || || || ||||| || |||||||| || |||||| Sbjct 362412 CCACCACGCAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 362471 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | ||| |||||||| || Sbjct 362472 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGG 362531 Query 68355 ATGCCTTCCTTGTCT 68369 || |||||||||||| Sbjct 362532 ATTCCTTCCTTGTCT 362546 >seq2 Length=4294494 Score = 91.5 bits (100), Expect = 3e-13 Identities = 231/349 (66%), Gaps = 2/349 (1%) Strand=Plus/Minus Query 176180 GTAGTTCAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTG 176239 |||| | || || ||||||| |||| |||||| | | || || | || || ||| | Sbjct 3202227 GTAGGTGAGAAGCGGCTCGTCAGCCTGGTGGAACAGCTTCCTGGCGAATGGAGAGAGTCG 3202168 Query 176240 TGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTG 176299 ||||||||||| | ||| |||| || ||||| || || || | ||||| || Sbjct 3202167 GGTGAAGATATAACGAGCGCTGGCACAATCGTTGCCGCCCTGGTTTCGCGTGCCGAACTG 3202108 Query 176300 TCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGAC 176359 ||| ||||| || | |||| ||| || || |||||| | | || |||| ||||| Sbjct 3202107 GCCGGAAGGAACCAGTAGGTTGACGTTGTTGGATCCCACGAAATTCTGTGCCAGACCGAC 3202048 Query 176360 TATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGAT-AGCCGGCGTTCTCACTTGTGTATC 176418 |||| ||| || || | ||||||||||| | ||| | | | | |||| | Sbjct 3202047 GATGGTTTGCTGTAGGGAAGTGTCGCCGTGGTGGTAAGCAGTCATAC-CACTGACGAGAG 3201989 Query 176419 CGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAACAGAA 176478 ||||| || ||||| || || || | | || || || || || | | ||| | Sbjct 3201988 AGGCAAGCTCGGCGACCTTCATATCCTTTTTCAGATTTCGTTTAAAACATGCGTACATGA 3201929 Query 176479 TCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 ||| ||||| ||||| ||||||||||| || || || ||||| || Sbjct 3201928 CCTTTCGCTGACCAGGCTTTAGACCATCGACAACAGAAGGGATGGATCG 3201880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620752599960