Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1 105 3e-17 seq6 95.1 5e-14 >seq1 Length=4470873 Score = 105 bits (116), Expect = 3e-17 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || || || || |||||||| || || || || ||||| ||| Sbjct 3798078 ATGCAAATCTTTGTCAAGACCCTTACGGGCAAAACTATCACACTGGAAGTCGAATCCTCT 3798137 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | || ||||||||||| || || || || || || ||||| Sbjct 3798138 GACACCATTGACAATGTGAAGAGCAAAATTCAAGACAAAGAGGGTATCCCCCCGGATCAG 3798197 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || || ||| |||| || ||||| ||||| || ||||| | | ||||| || Sbjct 3798198 CAACGATTGATCTTCGCAGGCAAGCAACTAGAAGACGGTCGAACTCTCTCAGATTACAAC 3798257 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 3798258 ATCCAGAAGGAATCCACTCTTCA 3798280 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391074 ACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAACAA 391133 || || || || || |||||||| || ||||| ||||| || || | || Sbjct 3797646 ACCGGAAAGACCATCACTCTTGAGGTCGAATCCAGTGATACGATCGACAACGTCAAGTCC 3797705 Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 || || || || ||||||||||||||||||||||| || ||| | || ||| |||| || Sbjct 3797706 AAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAGCGTCTTATCTTCGCAGGAAAG 3797765 Query 391194 CAACTTGAAGATGG 391207 |||||||||||||| Sbjct 3797766 CAACTTGAAGATGG 3797779 >seq6 Length=2533474 Score = 95.1 bits (104), Expect = 5e-14 Identities = 192/285 (67%), Gaps = 9/285 (3%) Strand=Plus/Plus Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || || || ||||| || || || ||||| || || ||||| || || || Sbjct 2240369 ACAGTCCCTGCCTACTTCAACGACATGCAGCGACAAGCTACCAAGGATGCTGGTCAAATC 2240428 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||||| | || ||||| || | | || || ||||| || ||||| || || ||||| Sbjct 2240429 GCTGGTCTTAACGTTCTCCGTGTCGTCAACGAGCCTACCGCTGCTGCGCTTGCCTATGGT 2240488 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 || | | ||| || || || |||| || ||| | |||| ||||||| || Sbjct 2240489 CTCG-------AGAAGGAAGAG--GACAAAATCATCGCAGTCTATGATCTTGGTGGTGGT 2240539 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 ||| |||| || | ||| || | | || || || ||||| ||| | || ||| Sbjct 2240540 ACTTTCGATATCTCCATTCTTGAGATCCAGAAGGGCGTCTTCGAAGTCAAGTCTACTAAT 2240599 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTG 451615 ||||||||||| | || |||||||| | |||| | || ||||| Sbjct 2240600 GGTGATACTCACTTGGGTGGTGAAGACTTCGATATTTCACTTGTG 2240644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975714780113444