Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 2e-15 seq3 82.4 5e-11 >seq1 Length=4470873 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | |||||||| || || ||||| ||||| || || | || |||| ||| Sbjct 3798514 ACCAAGTGCAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGACAGCGTCCGGCCATCCTCC 3798455 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| || || ||||| || | ||| || ||||| | || | ||||||||||| Sbjct 3798454 AACTGCTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGGAATACCCTCCTTGTCTTGG 3798395 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 || || ||||| | | ||||| | ||| | |||||| || | ||| || || Sbjct 3798394 ATTTTGCTCTTGAC----GTTGTCGATAGTGTCCGACGACTCAACTTCAAGGGTAATTGT 3798339 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | |||||| || |||||||||||| Sbjct 3798338 CTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 3798305 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/210 (71%), Gaps = 10/210 (5%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| |||||||||||||| ||||| ||||| | || |||| || | || Sbjct 3798053 GTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTGCGGCCATCTTCTAATTG 3797994 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||| || ||||| || | ||||||||||| | || | ||||||||||| |||||| Sbjct 3797993 TTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTT 3797934 Query 34898 -CTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || ||| || || | ||||| ||| | ||||| |||| ||| ||||| || Sbjct 3797933 GCTCTTT-AC--AT--TGTCGATGGTATCAGACGATTCAACCTCGAGGGTGATGGTCTTG 3797879 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || || || |||||| Sbjct 3797878 CCGGTCAGGGTCTTGACGAAAATTTGCATA 3797849 >seq3 Length=4123400 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 || |||||||| ||||| ||| |||| |||| || || || ||||||||||| || Sbjct 1163294 TTTTGAATGTTGTAGTCGCTAAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATC 1163235 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | |||||||||||| | || | || |||||||| ||||| ||||| || | Sbjct 1163234 AATCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGAC--AT--T 1163179 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || | ||| || |||| ||| ||||| || |||||||| ||||| || Sbjct 1163178 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1163119 Query 34970 AAAG 34973 ||| Sbjct 1163118 GAAG 1163115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633034224504