Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 129 5e-24 seq1 104 2e-16 >seq2 Length=4294494 Score = 129 bits (142), Expect = 5e-24 Identities = 326/488 (67%), Gaps = 12/488 (2%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| |||||||| ||| |||| || || || | || | ||||| || Sbjct 1079187 GAAATCATTGCCAACGATCAAGGCAACCGAACCACCCCCTCGTTCGTCGCCTTCACCGAC 1079246 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | | |||||||| ||||| | |||| | | || ||| || || Sbjct 1079247 ACTGAGCGTCTGATCGGTGATGCTGCAAAGAACCAAGTCGCCATGAACCCTCAGAACACA 1079306 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 |||| ||||| || || | ||||| ||| || || | |||||||| || Sbjct 1079307 GTTTTCGATGCCAAGCGACTGATTGGCCGAAAGTTCGCGGACGCTGAGGTTCAGGCTGAC 1079366 Query 550235 ATGAAGCATTGGCCTTTCCAA---ATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 |||||||| | || ||| | || | || | | ||||| || ||||| | | Sbjct 1079367 ATGAAGCACTTCCCATTCAAGGTCATCGACAAGGGT---GGAAAGCCAGTCATTGAGGTC 1079423 Query 550291 TACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | | |||| | || ||||| |||||||| |||| ||||| ||||| | | Sbjct 1079424 GAGT--TCAAGGGCGAGAACAAGCAATTCACACCAGAAGAAATCTCATCCATGGTCCTGA 1079481 Query 550350 TGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || |||| | | || ||| ||| || | |||| || | | ||||| || Sbjct 1079482 CCAAGATGAGAGAGACTGCCGAGTCCTATC-TTGGCGGCACTGTCAACAACGCAGTCATC 1079540 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || ||||| || || ||||| |||||||||||||| || || ||||| | ||| Sbjct 1079541 ACAGTTCCCGCATACTTCAACGACTCTCAACGTCAAGCTACCAAGGACGCTGGTCTCATT 1079600 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || ||||| || ||||| ||||| || ||||| || ||||| | || || || Sbjct 1079601 GCCGGCCTCAATGTGCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATCGCCTACGGT 1079660 Query 550529 CTTGATAA 550536 || || || Sbjct 1079661 CTCGACAA 1079668 >seq1 Length=4470873 Score = 104 bits (114), Expect = 2e-16 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCT-AGAGTTC 563314 ||||||||| |||||||| ||||| |||||| |||||||| || ||| || || | Sbjct 3797840 GAGACGGAGGACAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTC-GCTCAGGGTGC 3797782 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||||||||| ||||| || || ||||| | |||||||||||||||||||||| Sbjct 3797781 GGCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAGGAATTCCTT 3797722 Query 563375 CTTTATCTTGAATTTT 563390 | || || || || || Sbjct 3797721 CCTTGTCCTGGATCTT 3797706 Score = 96.9 bits (106), Expect = 3e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||| |||||||| ||||| ||| ||||| || | ||||| | Sbjct 3798067 AGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTGCGG 3798008 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| | |||||| || ||||| || | | |||||| || |||||||| || || Sbjct 3798007 CCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCCTCC 3797948 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCGAGAGT 563435 || || ||||| || ||||| || || ||||||| || | | ||||| || Sbjct 3797947 TTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGAC-GATTCAACCTCGAGGGT 3797889 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || || || || || ||||||||||||||| Sbjct 3797888 GATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCATA 3797849 Score = 95.1 bits (104), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || |||||||| || ||| || || |||||||| | ||||||| ||| Sbjct 3798289 AGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGAGTTCGACCGTCT 3798230 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || ||||| || || || || || | || ||||||||| || || || || ||||| ||| Sbjct 3798229 TCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGGGGATACCCTCTTTGTCT 3798170 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGT 563441 |||||||| || || ||||| || |||| | || | | ||| || || | ||| Sbjct 3798169 TGAATTTTGCTCTTCACATTGTCAATGGTGTCAGAG-GATTCGACTTCCAGTGTGATAGT 3798111 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 ||| || ||||| || || || || ||||||||| Sbjct 3798110 TTTGCCCGTAAGGGTCTTGACAAAGATTTGCATA 3798077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029288437515070