Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 129 4e-24 seq1 122 6e-22 seq3 86.0 4e-11 >seq2 Length=4294494 Score = 129 bits (142), Expect = 4e-24 Identities = 324/488 (66%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| |||||||| || ||||| || |||| || || || | || | || || || Sbjct 1079187 GAAATCATTGCCAACGATCAAGGCAACCGAACCACCCCCTCGTTCGTCGCCTTCACCGAC 1079246 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | ||| || || |||||||| || | |||| || || ||| || || Sbjct 1079247 ACTGAGCGTCTGATCGGTGATGCTGCAAAGAACCAAGTCGCCATGAACCCTCAGAACACA 1079306 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| ||||| || || ||||||| || || || | || | || || |||| Sbjct 1079307 GTTTTCGATGCCAAGCGACTGATTGGCCGAAAGTTCGCGGACGCTGAGGTTCAGGCTGAC 1079366 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | ||||| || ||| || || | | Sbjct 1079367 ATGAAGCACTTCCCATTCAAGGTCATCGACAAGGGTGGAAAGCCAGTCATTGAGGTCGAG 1079426 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || | || ||||| |||| ||| |||| || || ||||| | ||| Sbjct 1079427 TTCAAG--GGCGAGAACAAGCAATTCACACCAGAAGAAATCTCATCCATGGTCCTGACCA 1079484 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| || |||||||| || | | ||||| || || Sbjct 1079485 AGATGAGAGAGACTGCCGAG-TCCTATCTTGGCGGCACTGTCAACAACGCAGTCATCACA 1079543 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| ||||| || || || |||||||||||||| || || || || || ||||| Sbjct 1079544 GTTCCCGCATACTTCAACGACTCTCAACGTCAAGCTACCAAGGACGCTGGTCTCATTGCC 1079603 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||||| | ||||| || || || || || ||||| || | || || ||||| Sbjct 1079604 GGCCTCAATGTGCTCCGTATCATCAACGAGCCTACCGCAGCTGCCATCGCCTACGGTCTC 1079663 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1079664 GACAAGAA 1079671 >seq1 Length=4470873 Score = 122 bits (134), Expect = 6e-22 Identities = 149/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| |||||||| || || |||||| | ||| || || ||| || | Sbjct 3797843 ACGGAGACGGAGGACAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTC-GCTCAGGG 3797785 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | |||||||||||||||||| || || |||||||| || |||||||||||||||| Sbjct 3797784 TGCGGCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAGGAATTC 3797725 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||||||||| || ||||| ||||| || || |||||| || | |||| Sbjct 3797724 CTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTATCACTGGATTCGACCTCAA 3797665 Query 480730 GGGTAATAGTTTTACCGGTGA 480750 | || || || || ||||||| Sbjct 3797664 GAGTGATGGTCTTTCCGGTGA 3797644 Score = 109 bits (120), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| ||||| || ||||| || || || || | ||||| Sbjct 3798070 CGAAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTG 3798011 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | |||||| | ||| || || ||||| || | ||||| || || |||||||| || Sbjct 3798010 CGGCCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCC 3797951 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 |||||||| |||||||| || ||| || || ||||||| | | || ||| Sbjct 3797950 TCCTTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGACGATTCAACCTCGAGG 3797891 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || ||||| ||||||||||| Sbjct 3797890 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTG 3797853 >seq3 Length=4123400 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||||| | ||| || ||||||||||| ||||| || | ||||| || ||||| || Sbjct 1163273 AGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGTTGCTGGTCAGGTGGG 1163214 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 ||||||||||||||||| ||||| |||||| || || || || | | | | Sbjct 1163213 ATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCA-C 1163155 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 || ||||| || || || || ||||| ||||| ||||| Sbjct 1163154 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268173066036164