Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 3e-12 seq3 86.0 1e-11 >seq1 Length=4470873 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || || || || | || | |||||| ||| || Sbjct 3798085 ATTTGCATACCGCCGCGAAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTG 3798026 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | ||| ||||||||||| || ||||| || || | || || Sbjct 3798025 TAGTCTGAAAGAGTGCGGCCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGG 3797966 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || || || || || || ||| | |||| ||| || ||||| || Sbjct 3797965 TCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGAC 3797906 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || || || || || || || || || || || || || |||||||| Sbjct 3797905 GATTCAACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3797850 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || || ||||| || | ||| | ||| || || || || || ||||| || |||| | Sbjct 3798487 ATGTTGTAGTCAGACAGCGTCCGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGC 3798428 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| ||||| || || || || || ||||| |||||| | || | || ||||| Sbjct 3798427 TGTTGGTCAGGTGGAATACCCTCCTTGTCTTGGATTTTGCTCTTGACGTTGTCGATAGTG 3798368 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || ||||||||||| || || || || || || || | || || || || || ||| Sbjct 3798367 TCCGACGACTCAACTTCAAGGGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGC 3798308 Query 193359 AT 193360 || Sbjct 3798307 AT 3798306 >seq3 Length=4123400 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||| ||||||||||| || |||| || || ||||| || |||||||| || Sbjct 1163262 ATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGTTGCTGGTCAGGTGGGATTCCTTCCTT 1163203 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || |||| || | ||| || || ||||||||||| || || || || || Sbjct 1163202 GTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 1163143 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAA 193351 || || || || || || || || || Sbjct 1163142 GGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899652791867760