Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq1 150 4e-31 seq3 87.8 4e-12 >seq1 Length=4470873 Score = 150 bits (166), Expect = 4e-31 Identities = 173/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || | ||| || | || ||||| ||||| ||||| || || ||||| | Sbjct 3798306 TACCACCTCGTAATCTCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTG 3798247 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| ||| ||||||||||||||| || || || ||||| | || ||| ||||| || | Sbjct 3798246 AGAGAGTTCGACCGTCTTCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGG 3798187 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCT 82760 | || || || || |||||||| |||||| || ||||| ||||| || ||| | ||| Sbjct 3798186 GGATACCCTCTTTGTCTTGAAT-TTTGCTCTTCACATTGTCAATGGTGTCAGAGGATTCG 3798128 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || ||||| || | ||||| ||||| || ||||| Sbjct 3798127 ACTTCCAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACAAAGATTTGCAT 3798078 Score = 104 bits (114), Expect = 5e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || | || || || |||||||| || ||||| || || Sbjct 3797850 TACCACCACGGAGACGGAGGACAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTCGC 3797791 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || ||||| ||||| ||||| || ||||| || | || ||||| |||| Sbjct 3797790 TCAGGGTGCGGCCATCTTCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAG 3797731 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| | || || || || ||||||||| | | ||| | Sbjct 3797730 GAATTCCTTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTATCACTGGATTCGA 3797671 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | ||| || ||||| || || Sbjct 3797670 CCTCAAGAGTGATGGTCTTTCCGGT 3797646 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||||||||| ||| || || || || || ||||| || | | || || Sbjct 3798517 AGCACCAAGTGCAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGACAGCGTCCGGCCATCC 3798458 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | || || || |||||||| | || ||||| || || || || || ||||| ||| Sbjct 3798457 TCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGGAATACCCTCCTTGTCT 3798398 Query 82719 TGAATCTTTGCT-TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || || |||||| || || || || || || || | || ||||| | || || || Sbjct 3798397 TGGAT-TTTGCTCTTGACGTTGTCGATAGTGTCCGACGACTCAACTTCAAGGGTAATTGT 3798339 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| || ||||| ||||| || || |||||||| Sbjct 3798338 CTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 3798306 >seq3 Length=4123400 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || || ||||| ||||| |||||||| | || ||| || || || || Sbjct 1163273 AGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATCAATCGTTGCTGGTCAGGTGGG 1163214 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||||||||| ||||| ||||| | || ||||| || || || || || || || Sbjct 1163213 ATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACC 1163154 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 || | || || |||||||| || | ||||| || || Sbjct 1163153 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825401108477