Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23] 143 sequences; 38,224,514 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 178 3e-39 seq3 129 1e-24 seq2 105 2e-17 seq4 93.3 1e-13 >seq1 Length=4470873 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | |||||||||||||| ||||||||||| || ||||| || || | ||| || Sbjct 3798070 CGAAGACGGAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCTGAAAGAGTG 3798011 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||| | || |||||||| ||||| | |||||| ||||| ||||||| || Sbjct 3798010 CGGCCATCTTCTAATTGTTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATGCCC 3797951 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||| ||||| || || || |||||||| ||||| |||||||||||| Sbjct 3797950 TCCTTGTCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGACGATTCAACCTCGAGG 3797891 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || || ||||| || || | ||||| Sbjct 3797890 GTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 3797850 Score = 167 bits (184), Expect = 5e-36 Identities = 151/190 (79%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || ||||||||||| || || || ||||| | |||||| Sbjct 3797833 AGGACAAGATGGAGGGTTGATTCTTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCATCT 3797774 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| |||||||||||||| || || || |||||||||| ||||||||||||| Sbjct 3797773 TCAAGTTGCTTTCCTGCGAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCC 3797714 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| || ||| | ||| ||||| |||||||| ||| Sbjct 3797713 TGGATCTTGGACTTGACGTTGTCGATCGTATCACTGGATTCGACCTCAAGAGTGATGGTC 3797654 Query 211083 TTTCCCGTGA 211092 ||||| |||| Sbjct 3797653 TTTCCGGTGA 3797644 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||||||| || | ||| |||||| || ||||||||||| || || | || || Sbjct 3798527 ACGAAGTCTTAGCACCAAGTGCAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGACAGCGT 3798468 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 || ||||| |||| |||||||||||| ||||| | || ||||||||||| |||| || Sbjct 3798467 CCGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGGAATACC 3798408 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| ||||| || || ||||| ||||| ||||| || ||||| || || Sbjct 3798407 CTCCTTGTCTTGGATTTTGCTCTTGACGTTGTCGATAGTGTCCGACGACTCAACTTCAAG 3798348 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || | |||||| || || | |||||| Sbjct 3798347 GGTAATTGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 3798306 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| || ||||||||||| || || |||||||| ||||| | || || | || Sbjct 3798293 TCTCAGGACGAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGAGAGAGTTCGACC 3798234 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || ||||||||||||||||| | ||||| || || || || | || || || Sbjct 3798233 GTCTTCTAGTTGCTTGCCTGCGAAGATCAATCGTTGCTGATCCGGGGGGATACCCTCTTT 3798174 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || || ||||| || || |||||||||||| ||| || || || ||||| Sbjct 3798173 GTCTTGAATTTTGCTCTTCACATTGTCAATGGTGTCAGAGGATTCGACTTCCAGTGTGAT 3798114 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || ||||| ||||| | ||||| Sbjct 3798113 AGTTTTGCCCGTAAGGGTCTTGACAAAGATTTGCAT 3798078 >seq3 Length=4123400 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||| ||||| || || ||| || | ||||| || || ||||| || || ||||| Sbjct 1163294 TTTTGAATGTTGTAGTCGCTAAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCAAAGATC 1163235 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||||| |||||||| || | |||||||||||| |||||||| || || || ||| Sbjct 1163234 AATCGTTGCTGGTCAGGTGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCG 1163175 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 1163174 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 1163116 >seq2 Length=4294494 Score = 105 bits (116), Expect = 2e-17 Identities = 195/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTT-TC--TGCAAATGGCATCTTTGTACGCAATGAAGGGC 178144 || |||||||| ||||||||||| || |||| ||||| |||||| ||| |||| Sbjct 1336524 CCCAAGTTCTTCTGGTTGCTCTTCTCGTTGCAT---GCATCCTTGTACAAGATGTAGGGT 1336580 Query 178145 ATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTC 178204 | || ||||| |||||| | || || || ||| |||| ||||||| || || Sbjct 1336581 GTGCCAGTCTCAGTCTGAGCCTCAAGGATAGCATACCACAGCTTCTGGGCTTTGATGGTT 1336640 Query 178205 TTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAG 178264 | | |||||| |||||| || | ||||| ||||||||| ||||| Sbjct 1336641 TGACGACCACGTCCTTCCCGCTCGTATTTCTCATAGAGAGCCTCGAATTTTTCACCATAT 1336700 Query 178265 ACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTC 178324 |||||| | ||||| || ||||| | |||||||||||| |||| | || | || Sbjct 1336701 ACATCAGCAAGACCAGGCGCCTCGTGAGGGCAGAAGAGAGTCCAGTCCTGGTTCTTCTCA 1336760 Query 178325 ACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 || || |||||||| || |||| ||||| | || ||||||| Sbjct 1336761 ACACGCTTCATGAAAAGATCAGGAGTCCACAGCGCGTAGAAAA 1336803 >seq4 Length=3720747 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || || ||||| || |||||||| || || | ||||| | || || Sbjct 362427 AGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 362486 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || |||||||| || |||||||| || ||||| ||||| || || | |||||||||||| Sbjct 362487 TCGAGCTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATTCCTTCCTTGTC 362545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159149876216195