Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Exophiala_20oligosperma_20[genbank_20GCA_5F000835515.1_202015-02-23]
143 sequences; 38,224,514 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1 120 2e-22
seq3 84.2 1e-11
>seq1
Length=4470873
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || || || || ||||| ||||| ||||| ||||| || ||||| || ||| |
Sbjct 3798078 ATGCAAATCTTTGTCAAGACCCTTACGGGCAAAACTATCACACTGGAAGTCGAATCCTCT 3798137
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || | |||| || |||||||| ||| | || || |||||
Sbjct 3798138 GACACCATTGACAATGTGAAGAGCAAAA-TTCAAGACAAAGAGGGTATCCCCCCGGATCA 3798196
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|| || || || || || ||||| ||||| ||||||| || ||| | ||||||||
Sbjct 3798197 GCAACGATTGATCTTCGCAGGCAAGCAACTAGAAGACGGTCGAACTCTCTCAGATTACAA 3798256
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| || || || ||||| | ||| | || | || || ||||| ||
Sbjct 3798257 CATCCAGAAGGAATCCACTCTTCATCTCGTCCTGAGATTACGAGGTGG 3798304
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||| || ||||| || || || || ||||| ||||| ||||| || |
Sbjct 3797850 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTTGAATCGTCT 3797909
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | |||| || ||| ||||| || || | || || || ||
Sbjct 3797910 GATACCATCGACAATGTAAAGAGCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAG 3797969
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| || || || ||||| ||||||||| | ||||| | |||||| | || ||||||
Sbjct 3797970 CAACGCTTGATCTTTGCAGGCAAACAATTAGAAGATGGCCGCACTCTTTCAGACTACAAC 3798029
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || |||||||||||
Sbjct 3798030 ATTCAGAAAGAGTCCAC 3798046
>seq3
Length=4123400
Score = 84.2 bits (92), Expect = 1e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||||||||| || || ||||| ||||| || || || | ||||| |
Sbjct 1163116 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATC 1163175
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| | || | || || ||||| ||||| | || || || || || || ||
Sbjct 1163176 GACAATGTCAAGTC-CAAGATCCAAGACAAGGAAGGAATCCCACCTGACCAGCAACGATT 1163234
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| |||||||| || ||||| || || | || ||| | |||| |||||||| |||||
Sbjct 1163235 GATCTTTGCCGGAAAGCAACTCGAGGATGGCCGAACTCTTAGCGACTACAACATTCAAAA 1163294
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009010912644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |