Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 188 8e-43 seq1 111 2e-19 >seq3 Length=7151654 Score = 188 bits (208), Expect = 8e-43 Identities = 737/1146 (64%), Gaps = 17/1146 (1%) Strand=Plus/Plus Query 53706 CAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 53765 |||| ||||| || || || || || ||||||| || | | || | | || || | Sbjct 2825273 CAAT-GATGCAAGGTTGCACACAGCGACCTCATCAGGGGCAGTGTACTCGACAATTTCTG 2825331 Query 53766 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 53825 ||||||| || | ||| ||||| | || | ||| || |||||| |||| |||| Sbjct 2825332 TGCAAAGGTTGGAGCTGCGGATCGTTCCCAGGTTCTTTTGGTTGCTCTTTCTGTTGCACG 2825391 Query 53826 CATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCC 53885 ||||||| || || ||| | || | ||||| || |||| | || | ||| || | || Sbjct 2825392 CATCCTTGTAGAGCATGTACGGGTTGCCAGTCTCGGTCTGTGCCTCGAGAATGGCATACC 2825451 Query 53886 AGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTC--TTTCGTATAGT--GTA 53941 | | | ||||| || | || | | | ||| ||||||| | ||| Sbjct 2825452 ACAGTTTCTGGGCCTTGATGGTTGAACG--ACCACGGCCCTCCTTTTCGTAGCGCTCGTA 2825509 Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 || | | || || || || || | |||| | | | |||||| |||| || || Sbjct 2825510 TAGAGCC--TCGAATTCCTCGCCATAGACATCGGCAAGGCCAGGAGCCTCATGAGGGCAG 2825567 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 54061 | | | ||| ||| || | || || |||| ||| || ||||| ||| |||| || Sbjct 2825568 AAGAGTGTCCAGTCTTGGTTCTTCTCGACACGTTGCATGAACAGATCCGGAGTCCATAGT 2825627 Query 54062 GCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 54121 || || || || | | | ||||| ||||| |||||| | || | |||| Sbjct 2825628 GCGTAGAACAGGTCACGAGCACGGACCTCCTCTTTTCCGTGGTTCTTTCTCAGGTTGAGG 2825687 Query 54122 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTG 54181 ||| | | | ||| | ||||| || || | ||| |||| | | | || || || ||| Sbjct 2825688 AACTCGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTG 2825747 Query 54182 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 54241 || || || || || | || | || ||||| || | || | | ||| ||||| | Sbjct 2825748 TTGCCACCTTGGTCAACATAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGAATGAGG 2825807 Query 54242 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAA 54299 |||||||| | |||||||| |||| |||||| ||| | |||||||| | | | Sbjct 2825808 CCATTGGAAGTGCCATTGGTTCCGGCGATATAAGAGCCAGTAGCACGAATGCAGTGAGCA 2825867 Query 54300 TTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCAT 54359 |||| |||| || || || || | || ||||| | ||| ||| || | || || | Sbjct 2825868 TTGA--GACCGATGCCGCCGGCAGTCTTGGAGATCATTGCACATGTCTTGAGTGTGTCGT 2825925 Query 54360 AGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC 54419 |||||||||| || ||||| ||| |||| | | | || ||| |||| || Sbjct 2825926 AGATGCCCTCAATGCTATCTTCCTTCATATCGATCAAGAAGCAGGATGACAACTGAGCTT 2825985 Query 54420 GACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTA 54479 || || || || || || || || || || || || ||||| ||||| | || | | Sbjct 2825986 GAGGTGTGCCGGCGTTGAACAACGTGGGCGACGCATGAGTAAAGCATTTCTGGGACATGA 2826045 Query 54480 GATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCA 54539 | ||||| |||| || || || | || | ||||| || || | ||||||| Sbjct 2826046 GGTTGTATGTCTGAATGGCCTTCTCAACGTCGTCTCCGTGAATGCCAACAGACACACGCA 2826105 Query 54540 TTAACATGTGCTGAGGTCTTTCAACGATCTTG-TTGTTTATTTTCAGCAAGTAGGATTTT 54598 | | ||||||||| |||| |||| ||| |||| ||| || || || | ||| ||| || Sbjct 2826106 TAAGCATGTGCTGTGGTCGTTCAGCGA-CTTGCTTGCCGATCTTGAGGAGGTATGATCTT 2826164 Query 54599 TCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAG 54658 ||||| || || || || || || | ||| |||||||| ||||| | ||| | ||| Sbjct 2826165 TCCAACGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCCGAG 2826224 Query 54659 TTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAAATAATCGGAGA 54717 || | | ||| || ||| | || |||| ||| || ||||||| || || || Sbjct 2826225 TTCAACTCATCGGCATGTTTCATCAC-ACATTCATACGTCTCCTTTGAAATCATAGGGGA 2826283 Query 54718 ATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAG 54777 | | || || || || |||||||||| | | ||| | || ||| | Sbjct 2826284 AGGCTTGTTGTTCTTGGGGTTGACATAGTAGTAAAGATCTGAGACGACGGAGGAGAATTG 2826343 Query 54778 tttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATC 54837 ||| || |||| ||||| || || || ||||| || | || ||||| |||||||| || Sbjct 2826344 TTTCTTGGTTTGCTTGTGGAGGTTGGACACGGCAATACGTGCTGCTAGGATGGCATAGTC 2826403 Query 54838 CGGATG 54843 ||||| Sbjct 2826404 GGGATG 2826409 >seq1 Length=9941542 Score = 111 bits (122), Expect = 2e-19 Identities = 179/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 24216 TTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 || ||||| || ||||| || || |||||||| ||||| || ||||| || || || || Sbjct 8816714 TTGAGCCAGAAGATGGAGGCGAACGATCCAGAGAAGAAGATACCTTCGACGGCAGCGAAC 8816655 Query 24276 GCAATAAGTCTTTCTCCATAACCGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCG 24332 |||| |||||| | | | || | ||||| ||||| | | ||||| || Sbjct 8816654 GCAACAAGTCTCTGGGCGAAGGAGGAATCTTTGTCAGAGATCCATGTCAGGGCCCAGTCT 8816595 Query 24333 GCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTA 24392 ||||||||| | ||||| || || || || |||| || | ||| | || | || Sbjct 8816594 GCCTTCTTTCGGATGCAAGGGATGGTGTCAATGGCATCGAACAAATAAGTCTTCTGCTTG 8816535 Query 24393 CTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 24452 | ||||| | |||||||| ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 8816534 TTGTCTTTGATGTATGTATCGATCAACAGACTGTACATCTCGGAATGGATGTTTTCAATC 8816475 Query 24453 GCCATTTGAAATCCGTA 24469 ||||| || | ||| Sbjct 8816474 ATGATTTGGAAACTGTA 8816458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721562892400