Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq3 91.5 2e-13 seq2 84.2 2e-11 >seq1 Length=9941542 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| |||||||| | || || ||| | | Sbjct 2174566 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACACTAGAAGTGGAATCATCA 2174507 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 2174506 GACACGATCGACAACG-TCAAGTCTAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCA 2174448 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||||| |||| ||| ||||| ||| |||| |||| | || ||| ||||||||| Sbjct 2174447 ACAACGACTGATCTTCGCTGGCAAGCAGTTGGAAGACGGAAGAACACTCTCCGACTACAA 2174388 Query 40869 CATCCAGAAGGA 40880 ||| |||||||| Sbjct 2174387 CATTCAGAAGGA 2174376 Score = 96.9 bits (106), Expect = 4e-15 Identities = 302/474 (64%), Gaps = 53/474 (11%) Strand=Plus/Plus Query 116944 TTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCG 117003 |||||| | ||||| || || || || ||| || | ||||||| || ||||| ||| Sbjct 8816550 TTTGTTCGATGCCATTGACACCATCCCTTGCATCCGAAAGAAGGCAGACTGGGCCCTGAC 8816609 Query 117004 CTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 |||||| | | || ||| || |||||| | || | || || || ||||| |||||||| Sbjct 8816610 ATGGATCTCTGACAAAGATTCCTCCTTCGCCCAGAGACTTGTTGCGTTCGCTGCCGTCGA 8816669 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA------------ 117111 || ||||||| || || |||||| |||| || |||||||||| Sbjct 8816670 AGGTATCTTCTTCTCTGGATCGTTCGCCTCCATCTTCTGGCTCAAGAGCAAGGGTATGTT 8816729 Query 117112 ---------AC----------------GC------------GGCCTCATGCCCGGCCTGA 117134 || || || ||||||||||| ||| Sbjct 8816730 TCTCTTCACACTGCTTCGTGCTCAATTGCTGACCATTAAAAGGTCTCATGCCCGGATTGA 8816789 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | ||| |||||| |||||||| | || |||||| |||| ||||| || || | | Sbjct 8816790 CCTTCTCCAACGAACTCATCTCTCGTGATGAGGGTATGCACACTGACTTCGCATGCCTTC 8816849 Query 117195 TGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACG 117254 | | | ||| | || ||| ||| | | | | ||| ||||| ||||||| | Sbjct 8816850 TCATGCAACATCTCAAACACAAACCCAGCCCAGAACTCATCAACAAGATCATCACCGAGG 8816909 Query 117255 CGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTC 117313 | |||||||| ||| || |||||||| || || || || |||| ||||| ||| | Sbjct 8816910 CTGTCGCCATTGAGAAGGAGTTCCTCACTGACGCCCTCCCTTGTGC-ACTGCTCGGAATG 8816968 Query 117314 AATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || || || | ||| ||||||||| |||||||| |||||| | || || || Sbjct 8816969 AA-CGCCAAGCTCATGCAGCAATACATTGAGTTCGTTGCCGACCGCCTACTCCT 8817021 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| | || |||||| ||| ||| | | | | |||| |||| Sbjct 2175000 TCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATTGACAACG-TCAAA 2174942 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || || || || | || || || || ||||||| ||| || Sbjct 2174941 TCTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAACAGCGTCTCATCTTCGCCGGA 2174882 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| | ||| ||||||||||| |||||| | || || Sbjct 2174881 AAGCAGCTCGAAGATGGCCGCACCCTGAGCGATTACAACATCCAAAAGGAGTCTACACTC 2174822 Query 40891 CAT 40893 ||| Sbjct 2174821 CAT 2174819 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/222 (69%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 116638 GTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTC 116697 |||| |||||| || || || ||||| |||||||| | || ||||| || || || Sbjct 8816186 GTGGAACATGTATAAGCGTGCAGAAGCGTCATTCTGGACAGCTGAAGAGGTTGATCTCTC 8816245 Query 116698 CAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||| ||||||| | || |||||||| ||||| | | ||||| || Sbjct 8816246 CAAGGATCTTCACGACTGGCACAACCGTTTGAACGATGACGAGAGATACTTCATTTCTCA 8816305 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 || || ||||| || || || ||| || ||||||||||| ||||| ||||||| || Sbjct 8816306 TGTCCTTGCCTTCTTTGCTGCTTCCGATGGTATCGTCAACGAAAATCTCCTCGAGCGCTT 8816365 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 | | ||||| || | | || || || ||||||||||| Sbjct 8816366 CAGCAATGAGGTACAAATTCCTGAAGCTCGTTGCTTCTACGG 8816407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || ||||| || || || | || ||||| | | Sbjct 2174338 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATTACGCTGGAAGTCGAGTCTTCT 2174279 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| ||| |||| ||||| |||||||||||| | ||||| Sbjct 2174278 GATACCATCGACAACG-TGAAGTCAAAGATTCAAGACAAGGAGGGCATCCCCCCTGACCA 2174220 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| || || || ||| |||| || | || || || |||||||| Sbjct 2174219 ACAACGCTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGACTACAA 2174160 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| ||| ||||| Sbjct 2174159 CATTCAGAAGGAGAGCACTCTGCA 2174136 >seq3 Length=7151654 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || |||||| |||| || || | |||| | | Sbjct 5522585 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTAGAGTCTTCCGATACTATC 5522526 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| |||| || || | ||||| || ||||| || | || || ||||| || Sbjct 5522525 GACAACG-TCAAATCCAAGATCCAAGACAAGGAAGGCATTCCACCAGATCAACAACGTCT 5522467 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || |||||||| || || || | || ||||| | |||||||||||| ||||| Sbjct 5522466 GATCTTTGCCGGCAAACAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATTCAGAA 5522407 Query 40878 GG 40879 || Sbjct 5522406 GG 5522405 >seq2 Length=7897194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || || || | |||||||| || || |||| ||| ||||| || || || Sbjct 2363821 GACAAGGAAGGAATTCCGCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTCGAG 2363762 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || | ||||| || |||||||||||||||||||||| | || ||||| || || Sbjct 2363761 GATGGACGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTTGT 2363706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219167798800