Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 196 6e-45 seq1 123 3e-23 >seq3 Length=7151654 Score = 196 bits (216), Expect = 6e-45 Identities = 737/1142 (65%), Gaps = 18/1142 (2%) Strand=Plus/Plus Query 71704 GATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAA 71763 ||||| || || || || || ||||||| || | | || | | |||||| |||||| Sbjct 2825277 GATGCAAGGTTGCACACAGCGACCTCATCAGGGGCAGTGTACTCGACAATTTCTGTGCAA 2825336 Query 71764 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 71823 || || | ||| ||||| | || | ||| || |||||| |||| ||||||||| Sbjct 2825337 AGGTTGGAGCTGCGGATCGTTCCCAGGTTCTTTTGGTTGCTCTTTCTGTTGCACGCATCC 2825396 Query 71824 TTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 71883 || || || || |||| | ||||| || |||| | || | ||| || | ||| | | Sbjct 2825397 TTGTAGAGCATGTACGGGTTGCCAGTCTCGGTCTGTGCCTCGAGAATGGCATACCACA-G 2825455 Query 71884 ACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTC--TTTCGTATTGT--GTATATA 71938 || | ||||| || | | | | | ||| ||||||| | ||||| | Sbjct 2825456 TTTCTGGGCCTTGATGGT--TGAACGACCACGGCCCTCCTTTTCGTAGCGCTCGTATAGA 2825513 Query 71939 ATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 | ||||| || || || | ||| | | | |||||| |||| || || | | Sbjct 2825514 GCC--TCGAATTCCTCGCCATAGACATCGGCAAGGCCAGGAGCCTCATGAGGGCAGAAGA 2825571 Query 71999 ATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTA 72058 || ||| ||| | | | || |||| ||| || ||||| ||| |||| || || Sbjct 2825572 GTGTCCAGTCTTGGTTCTTCTCGACACGTTGCATGAACAGATCCGGAGTCCATAGTGCGT 2825631 Query 72059 TAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 72118 || || || | | | |||||| ||||| |||||| | || | ||||||| Sbjct 2825632 AGAACAGGTCACGAGCACGGACCTCCTCTTTTCCGTGGTTCTTTCTCAGGTTGAGGAACT 2825691 Query 72119 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTC 72178 | | | ||| | ||||| || || | ||| ||||| | | | || || || ||||| | Sbjct 2825692 CGAAGACATCTGCGTGCCATGGCTCGAGGTAGATGGCAAAAGCACCGGGTCGCTTGTTGC 2825751 Query 72179 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 72238 | || || || | || | || ||||| || | || | | ||| ||||| | |||| Sbjct 2825752 CACCTTGGTCAACATAGCGGGCAGTGTTGTTGAAGACCCGGAGCATAGGAATGAGGCCAT 2825811 Query 72239 TGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGA 72296 |||| | |||||||| |||| |||||| ||| | |||||||| | || ||||| Sbjct 2825812 TGGAAGTGCCATTGGTTCCGGCGATATAAGAGCCAGTAGCACGAATGCAGTGAGCATTGA 2825871 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 |||| || || || || | || ||||| | ||| ||| || | || || ||||| Sbjct 2825872 --GACCGATGCCGCCGGCAGTCTTGGAGATCATTGCACATGTCTTGAGTGTGTCGTAGAT 2825929 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 72416 |||||| || ||||| ||| |||| | | | || ||| |||| || || Sbjct 2825930 GCCCTCAATGCTATCTTCCTTCATATCGATCAAGAAGCAGGATGACAACTGAGCTTGAGG 2825989 Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 || || || || || || || || || || || ||||| ||||| | |||| || || Sbjct 2825990 TGTGCCGGCGTTGAACAACGTGGGCGACGCATGAGTAAAGCATTTCTGGGACATGAGGTT 2826049 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| |||| ||| || || | || | || || || || | |||||||| | Sbjct 2826050 GTATGTCTGAATGGCCTTCTCAACGTCGTCTCCGTGAATGCCAACAGACACACGCATAAG 2826109 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTG-TTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| ||||| |||| |||| ||| |||| || || || | | ||| ||| |||||| Sbjct 2826110 CATGTGCTGTGGTCGTTCAGCGA-CTTGCTTGCCGATCTTGAGGAGGTATGATCTTTCCA 2826168 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 | || || || || || || | ||| |||||||| ||||| | ||| |||| || | Sbjct 2826169 ACGTCTTGAAGCCGAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACAATGGCCGAGTTCA 2826228 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCAT-GGTGATACTTGAAATAATCGGAGAATGT 72714 | ||| || ||| | || | || ||| || ||||||| || || ||| | Sbjct 2826229 ACTCATCGGCATGTTTCATCAC-ACATTCATACGTCTCCTTTGAAATCATAGGGGAAGGC 2826287 Query 72715 TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 72774 || || || || || ||||||| | | | ||| | || ||| |||| Sbjct 2826288 TTGTTGTTCTTGGGGTTGACATAGTAGTAAAGATCTGAGACGACGGAGGAGAATTGTTTC 2826347 Query 72775 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGA 72834 || |||| |||||| || || || ||||| || | || ||||| |||||||| || ||| Sbjct 2826348 TTGGTTTGCTTGTGGAGGTTGGACACGGCAATACGTGCTGCTAGGATGGCATAGTCGGGA 2826407 Query 72835 TG 72836 || Sbjct 2826408 TG 2826409 >seq1 Length=9941542 Score = 123 bits (136), Expect = 3e-23 Identities = 171/239 (72%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 42146 TTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAG 42205 || ||||| || || || || || |||||||| |||||||| ||||| || || || || Sbjct 8816714 TTGAGCCAGAAGATGGAGGCGAACGATCCAGAGAAGAAGATACCTTCGACGGCAGCGAAC 8816655 Query 42206 GCAATAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGCCCAATCG 42262 |||| |||||||| | | || | ||||| ||||| | | ||||| || Sbjct 8816654 GCAACAAGTCTCTGGGCGAAGGAGGAATCTTTGTCAGAGATCCATGTCAGGGCCCAGTCT 8816595 Query 42263 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 42322 ||||||||| | ||||| || || || ||||||| || | ||| | || | || Sbjct 8816594 GCCTTCTTTCGGATGCAAGGGATGGTGTCAATGGCATCGAACAAATAAGTCTTCTGCTTG 8816535 Query 42323 CTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 | ||||| | |||||||||||||| ||||| ||||| || ||||| ||||||||||| Sbjct 8816534 TTGTCTTTGATGTATGTATCGATCAACAGACTGTACATCTCGGAATGGATGTTTTCAAT 8816476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139158053800