Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 212 1e-49 seq3 129 1e-24 seq2 95.1 2e-14 >seq1 Length=9941542 Score = 212 bits (234), Expect = 1e-49 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || | || ||||||||||| || || || || || ||||| || |||||| Sbjct 2174340 CCACCTCGCAGTCTCAGCACCAAGTGTAGTGTAGATTCCTTCTGAATGTTGTAGTCGGAG 2174399 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| || || ||||| |||||||| || ||||| || |||| |||||||||||| || Sbjct 2174400 AGTGTTCTTCCGTCTTCCAACTGCTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGGGGG 2174459 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| | ||||||| ||||| ||||||| |||||| ||| Sbjct 2174460 ATACCCTCCTTGTCTTGAATCTTAGACTTGACGTTGTCGATCGTGTCTGATGATTCCACT 2174519 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || ||||| ||||||||||| || |||||||| Sbjct 2174520 TCTAGTGTGATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 2174566 Score = 163 bits (180), Expect = 5e-35 Identities = 185/247 (75%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 68217 ATGATGTGATT--TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTT 68274 ||||| || || ||| | || || ||||| | || |||||||| || ||| ||| | Sbjct 2174092 ATGATTTGGTTCTTTACTGGCCACCACGAAGTCTCAGCACCAAGTGCAGAGTGCTCTCCT 2174151 Query 68275 TTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGA 68334 | || ||||| || || || || || | ||||| || |||||||| ||||| || || | Sbjct 2174152 TCTGAATGTTGTAGTCAGAAAGAGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCA 2174211 Query 68335 GTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGA 68394 | ||||||||| || || ||||| ||||||||||||||||||| ||| ||| |||| Sbjct 2174212 AGCGTTGTTGGTCAGGGGGGATGCCCTCCTTGTCTTGAATCTTTGACTTCACGTTGTCGA 2174271 Query 68395 TGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 |||| || | || || ||||||| || || || || || || | |||||||||||| | Sbjct 2174272 TGGTATCAGAAGACTCGACTTCCAGCGTAATCGTCTTGCCAGTCAAGGTCTTGACGAAGA 2174331 Query 68455 TCTGCAT 68461 ||||||| Sbjct 2174332 TCTGCAT 2174338 Score = 149 bits (164), Expect = 1e-30 Identities = 158/206 (77%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || || ||||| ||||||||||| |||||| Sbjct 2174796 CCACCACGGAGACGAAGGACCAAATGGAGTGTAGACTCCTTTTGGATGTTGTAATCGCTC 2174855 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| |||||||| ||||| | ||||| ||||| ||| Sbjct 2174856 AGGGTGCGGCCATCTTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGA 2174915 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| || ||||| | |||||| || ||||| || ||| ||||| || Sbjct 2174916 ATTCCTTCCTTGTCCTGGATCTTAGATTTGACGTTGTCAATGGTATC-GCTGGATTCGAC 2174974 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| ||||| |||| Sbjct 2174975 CTCAAGGGTGATGGTCTTTCCGGTGA 2175000 Score = 147 bits (162), Expect = 4e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || ||||| || ||||| |||||| || || | || ||||| | Sbjct 2174587 CAAGATGGAGGGTAGATTCTTTCTGAATGTTGTAATCGCTCAGGGTTCGGCCGTCTTCAA 2174646 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 || || ||||| || || || | |||||||||||| ||||||||||||||||| |||| Sbjct 2174647 GTTGTTTGCCGGCAAAGATTAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGAA 2174706 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | |||||| ||||| ||||| ||| || || ||||||||||| || || | Sbjct 2174707 TCTTGGACTTGACATTATCGATAGTGTCGCTTGACTCAACCTCCAAGGTGATAGTCTTGC 2174766 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || || ||||| ||||| || ||||| Sbjct 2174767 CAGTAAGAGTCTTAACGAAGATTTGCAT 2174794 >seq3 Length=7151654 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || ||| || || | ||||| || | || || ||||| || || Sbjct 5522407 TTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGTTTGCCGGCAAAGATC 5522466 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | |||||| || ||||||||||||||||||||||| ||||| | |||||| ||| Sbjct 5522467 AGACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGATTTGACGTTGTCG 5522526 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | || ||||| || | |||||| || || |||||||||||||||||||| Sbjct 5522527 ATAGTATCGGAAGACTCTACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 5522585 Score = 95.1 bits (104), Expect = 2e-14 Identities = 406/631 (64%), Gaps = 28/631 (4%) Strand=Plus/Minus Query 176040 TTGTCTACGATATCCTTGGGGTTGTAAGCCGGAATGTTAGTGCTAAATCCTGTTCCTATT 176099 || || || ||||||| || ||||| |||||| | || | || ||||| || Sbjct 3440838 TTATCGACAATATCCTCAGGATTGTAGTTTGGAATGGACGAACTCCAGCCCGTTCCAATA 3440779 Query 176100 CCTGACGATCCATTCACCAGGAGAAACGGGATGGTGGGAACATAGTATTCCGGTTCAATC 176159 || | |||||||| |||| | || | ||||||||| ||| || |||||| Sbjct 3440778 CCATCGGCACCATTCACGAGGACCAGAGGCACCACGGGAACATATACTTCAGGCTCAATC 3440719 Query 176160 CGGTCGCCGTCATCCTCGAGGTAGT---TCAGCAGACGCTCGTCGGCCTTGTGGAAAATA 176216 | ||||| ||| || || ||| ||| ||||||| |||| ||||| | Sbjct 3440718 AAA---CGATCATCGTCGGTGTTGTAAGTCAACAGCGGCTCGTCAGCCTGATGGAAGAGT 3440662 Query 176217 TCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCT 176276 | | || | | ||||| | ||||| ||||| | ||| |||||||| | ||| Sbjct 3440661 TTTCTGGCGAAGCCAGACAGGCGCGTGAAAATATAACGAGCGCTAGCACTGTCACTTCCT 3440602 Query 176277 CCGTGAAGGCGGGAACCGAATTGTCCGCGAGGA----AGAAGCAAATTGATGTTATTCGA 176332 || ||| | | ||| ||||| || |||| ||||| |||| ||| ||||| Sbjct 3440601 CCTTGATTTCTCGTACCAAATTGGCCT-GAGGGTTCTAGAAGG---TTGACGTTGTTCGA 3440546 Query 176333 ACCCACGTA-GTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGT 176391 |||||| | |||| |||| | ||||| || | |||||||||| | || ||||||| Sbjct 3440545 TCCCACGAAAGTCT-GGGCGAGACCGACGATCGTCTGCTGGAGAGACACTTCACCGTGGT 3440487 Query 176392 GATA-GCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACG 176450 |||| || | | | |||| || || | || ||| ||||| || || | | Sbjct 3440486 GATACGCTGTCAAGC-CACTGACCAGACCAGCCAGCTCCGCCACTTTCATGTCCTTTTTC 3440428 Query 176451 AGGTTGCGCTTCAACGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACG 176510 |||||||| || || | | ||| | |||||||| ||||||||||||||||| Sbjct 3440427 AGGTTGCGTTTGAAGCATGCGTACATGACTTTCCGCTGACCAGGCTTCAGACCATCGACA 3440368 Query 176511 ACCGACGGAATGGAACGCTCTACATCGT-----ATCTTGAAAAAAGGATAAGGTCTTTGT 176565 || || ||||| || || | || || || || || || || || || |||| Sbjct 3440367 ACGGAAGGAATAGACCG---AATATTGTCGGCCATGCTG--AAGAGAATCAGCTCCTTGT 3440313 Query 176566 TTATGAAATCCTCCACTGGAATCTTCGTGAGCTTCTGGTCGAGCTGGTTGCCAGGCTCGA 176625 | | |||||| | ||||||| || || |||||||| | | || || | || Sbjct 3440312 TGACGAAATCAGTGTAGGTAATCTTCTCGATGTTATGGTCGAGGTAAGTTCCTGGTTTGA 3440253 Query 176626 AATCAAGGAGCCACGTCTTCCGTTCGTCCGC 176656 | | | | |||||| ||| | |||||||| Sbjct 3440252 ATTGACGTAGCCACTCCTTTCTCTCGTCCGC 3440222 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 31362 CCCTCAAAGGTAGGATGGGGACCGTGCTCTTCCGCGAGTTCGCAAGAGGCCTCCACCGCT 31421 ||||| | || ||| ||| || ||||| | || || || || || || | || Sbjct 2824944 CCCTCGTACGTCTGATAGGGTCCTTGCTCCTGTGCAAGCTCACATGAAGCTGTAAGGGCA 2825003 Query 31422 GCAAAGTAAATATTCTCAAAGATTTCCCGGTTGAGGTTCTTGGCCGCGTCAGAGTCAAAA 31481 ||| |||||| |||| ||||| | |||||| | ||| || ||| |||||| Sbjct 2825004 GCATGGTAAATGGTCTCGAAGATCTGAATGTTGAGTTGGCGGGCTTCGGGAGATTCAAAA 2825063 Query 31482 GGCATGCGCAGCTTGAAGAACACGTCCTGAAGACCCTGGACACCCACTCCAATTGGGCGC 31541 |||| || || || ||| | || |||||||||||||||| ||||| || | Sbjct 2825064 GGCAAACGGAGAGCGAGGAAAGCATCAGCCAGACCCTGGACACCCAAACCAATGGGTCTG 2825123 Query 31542 CGGCGCATGTTACTAGTCTTCGCCTCGGGAATTGCGTAGGACATGACGTCAATGCTCTTG 31601 | |||||||| || |||||||||| |||| | |||| | ||||||| ||| ||||| Sbjct 2825124 TGTCGCATGTTGCTGTTCTTCGCCTCAGGAACAGGGTAGTAGTTGACGTCGATGATCTTG 2825183 Query 31602 T 31602 | Sbjct 2825184 T 2825184 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 225515 AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTCA 225574 ||||| |||||||| ||||||||| |||||| ||||||||||| || ||||| || || Sbjct 4622860 AGCCAGGCCACGTTCTTGACGTCCAAGTGGTTGGTAGGTTCGTCGAGCAGCAGAATATCC 4622801 Query 225575 GCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGAG 225634 | || || | ||| || | |||| |||||||| ||||| || || ||||| ||| Sbjct 4622800 GGGTCCTCGAACACGGCACGGGCAAGAGCAAGCTTCATCTTCCAACCACCAGACAGCGAG 4622741 >seq2 Length=7897194 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || |||||||| || ||||| Sbjct 2363688 CCACCTCGAAGTCGGAGAACAAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAA 2363747 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| || || | || |||||||| ||| Sbjct 2363748 AGAGTGCGTCCATCCTCGAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGCGGA 2363807 Query 68355 ATGCCTTCCTTGTCT 68369 || |||||||||||| Sbjct 2363808 ATTCCTTCCTTGTCT 2363822 Score = 89.7 bits (98), Expect = 9e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 |||||||||||| |||||| ||||||||||| | || || || || | |||||| | Sbjct 2363874 CTTGAATCTTTGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAG 2363933 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || ||||||||||| |||||||| |||||||| Sbjct 2363934 TCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 2363967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622342398600