Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 154 3e-32 seq3 111 3e-19 >seq1 Length=9941542 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| |||||| ||| || ||||| ||||| || | |||||| | Sbjct 2174121 AGTCTCAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGA 2174180 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||| || || ||||| | ||||||||||| || || ||||| || Sbjct 2174181 CCATCCTCCAACTGCTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGGGGGATGCCCTCC 2174240 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| ||| ||| ||||| || ||||| || ||| || ||||| || ||| Sbjct 2174241 TTGTCTTGAATCTTTGACTTCACGTTGTCGATGGTATCAGAAGACTCGACTTCCAGCGTA 2174300 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||| || ||||| || || ||||| | ||||| Sbjct 2174301 ATCGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 2174338 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| || | ||| || || || || || ||||| ||||| |||| || ||||| Sbjct 2174349 AGTCTCAGCACCAAGTGTAGTGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTTCTT 2174408 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | |||||| || |||||||| |||||||||||||| || || || || || Sbjct 2174409 CCGTCTTCCAACTGCTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGGGGGATACCCTCC 2174468 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || ||||||||| || || ||||| || ||||||||| || || Sbjct 2174469 TTGTCTTGAATCTTAGACTTGACGTTGTCGATCGTGTCTGATGATTCCACTTCTAGTGTG 2174528 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | || || || || | ||||| Sbjct 2174529 ATGGTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCAT 2174566 Score = 131 bits (144), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || || || ||||| ||||| ||||||||| || |||| || ||||| Sbjct 2174586 ACAAGATGGAGGGTAGATTCTTTCTGAATGTTGTAATCGCTCAGGGTTCGGCCGTCTTCA 2174645 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || || ||||| || ||||||||||| |||||||||||||| ||||| ||| Sbjct 2174646 AGTTGTTTGCCGGCAAAGATTAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGA 2174705 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || || |||||| || || || ||||| ||| || || || | ||| | ||| Sbjct 2174706 ATCTTGGACTTGACATTATCGATAGTGTC---GCTTGACTCAACCTCCAAGGTGATAGTC 2174762 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | ||| || ||||| | |||||| Sbjct 2174763 TTGCCAGTAAGAGTCTTAACGAAGATTTGCAT 2174794 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| ||||| || ||||||||| || || | ||||||||||||||| Sbjct 2174820 TGGAGTGTAGACTCCTTTTGGATGTTGTAATCGCTCAGGGTGCGGCCATCTTCGAGCTGC 2174879 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| || || ||||| || |||||||| ||||| ||||| || || || Sbjct 2174880 TTTCCGGCGAAGATGAGACGCTGTTGATCGGGAGGAATTCCTTCCTTGTCCTGGATCTTA 2174939 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||| |||||||| || ||| || |||||||| | |||||||| || Sbjct 2174940 GATTTGACGTTGTCAATGGTATCGCTGGATTCGACCTCAAGGGTGATGGTCTTTCCGGT 2174998 >seq3 Length=7151654 Score = 111 bits (122), Expect = 3e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || ||||| ||||| ||| || |||| ||||| ||||| || || || || ||||| Sbjct 5522407 TTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGTTTGCCGGCAAAGATC 5522466 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || |||||||| ||||| ||||||||||| |||||||| || || |||||||| || Sbjct 5522467 AGACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGATTTGACGTTGTCG 5522526 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 || || || ||| || || || ||||| | ||||| || || | || || ||||| Sbjct 5522527 ATAGTATCGGAAGACTCTACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 5522585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481528923835