Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 seq3 86.0 4e-12 >seq1 Length=9941542 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||||||| | ||| ||| ||||||||||| ||||| || || ||| | | Sbjct 2174352 CTCAGCACCAAGTGTAGTGTAGATTCCTTCTGAATGTTGTAGTCGGAGAGTGTTCTTCCG 2174411 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| ||| || || || || || |||||||| ||||| | || | ||||||||| Sbjct 2174412 TCTTCCAACTGCTTGCCAGCGAAGATCAGTCGTTGTTGGTCGGGGGGGATACCCTCCTTG 2174471 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| |||||| | |||| || | || || || | || ||| Sbjct 2174472 TCTTGAATCTTAGACTTGACGTTGTCGATCGTGTCTGATGATTCCACTTCTAGTGTGATG 2174531 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||| || ||||| ||||||||||||||| Sbjct 2174532 GTCTTGCCCGTAAGGGTCTTGACAAAGATCTGCATA 2174567 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826 |||| |||||||| | ||||| || ||||||||||| ||||| ||||| | || || Sbjct 2174124 CTCAGCACCAAGTGCAGAGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGACCA 2174183 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || |||| ||| ||||||||||| || | ||||| ||||| | || | ||||||||| Sbjct 2174184 TCCTCCAACTGCTTTCCGGCAAAGATCAAGCGTTGTTGGTCAGGGGGGATGCCCTCCTTG 2174243 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| || ||| | || | ||| | ||| || || | || || Sbjct 2174244 TCTTGAATCTTTGACTTCACGTTGTCGATGGTATCAGAAGACTCGACTTCCAGCGTAATC 2174303 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || | ||||| || |||||||||||| Sbjct 2174304 GTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATA 2174339 Score = 102 bits (112), Expect = 5e-17 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||||||||| || || ||| |||| | || || || ||||| |||||||| Sbjct 2174603 TTCTTTCTGAATGTTGTAATCGCTCAGGGTTCGGCCGTCTTCAAGTTGTTTGCCGGCAAA 2174662 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 ||||| ||||| ||||| | || | || |||||||| |||||| ||||| | Sbjct 2174663 GATTAGACGTTGTTGGTCGGGAGGAATGCCTTCCTTGTCCTGAATCTTGGACTTGAC--A 2174720 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||||| || | | |||||| || | ||| || || || || || ||||||| Sbjct 2174721 T--TATCGATAGTGTCGCTTGACTCAACCTCCAAGGTGATAGTCTTGCCAGTAAGAGTCT 2174778 Query 34966 TCACAAAGATCTGCATA 34982 | || ||||| |||||| Sbjct 2174779 TAACGAAGATTTGCATA 2174795 >seq3 Length=7151654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| ||| |||| |||| || || ||||| |||||||| || Sbjct 5522407 TTCTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGTTTGCCGGCAAAGATC 5522466 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || ||||| || ||| | || | || |||||||| ||||| ||||||| | Sbjct 5522467 AGACGTTGTTGATCTGGTGGAATGCCTTCCTTGTCTTGGATCTTGGATTTGACGTTGTCG 5522526 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || | ||| || |||| ||| || || || |||||||| ||||| || ||| Sbjct 5522527 ATAGTATCGGAAGACTCTACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAG 5522586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633580217640