Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 seq3 96.9 3e-15 >seq1 Length=9941542 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || || ||||||||| | || Sbjct 2174566 ATGCAGATCTTTGTCAAGACCCTTACGGGCAAGACCATCACACTAGAAGTGGAATCATCA 2174507 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || ||||||||||| || || || || ||||| ||| Sbjct 2174506 GACACGATCGACAACGTCAAGTCTAAGATTCAAGACAAGGAGGGTATCCCCCCCGACCAA 2174447 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| ||||| || ||||||||| | || | ||||| |||||| Sbjct 2174446 CAACGACTGATCTTCGCTGGCAAGCAGTTGGAAGACGGAAGAACACTCTCCGACTACAAC 2174387 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || |||| ||||| || | |||| ||||| || Sbjct 2174386 ATTCAGAAGGAATCTACACTACACTTGGTGCTGAGACTGCGAGGTGGTAT 2174337 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || |||||| |||| || | || || || | | Sbjct 2174794 ATGCAAATCTTCGTTAAGACTCTTACTGGCAAGACTATCACCTTGGAGGTTGAGTCAAGC 2174735 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| |||||||| || ||||| ||| Sbjct 2174734 GACACTATCGATAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGACCAA 2174675 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | |||||||||||| | |||||| | ||| | |||||||||| Sbjct 2174674 CAACGTCTAATCTTTGCCGGCAAACAACTTGAAGACGGCCGAACCCTGAGCGATTACAAC 2174615 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||| | ||| | || | ||| | || ||||| || Sbjct 2174614 ATTCAGAAAGAATCTACCCTCCATCTTGTCCTCCGTCTCCGTGGTGGTAT 2174565 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 ||||| ||| | || || ||||| || ||| | ||| | ||||| | |||||| Sbjct 2174998 ACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATTGACAACGTCAAATCT 2174939 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| ||||| || || ||||||||||||||| | || | |||||| || Sbjct 2174938 AAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAACAGCGTCTCATCTTCGCCGGAAAG 2174879 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || | ||||| | ||| | |||||||||||| ||||||||||| || | ||| Sbjct 2174878 CAGCTCGAAGATGGCCGCACCCTGAGCGATTACAACATCCAAAAGGAGTCTACACTCCAT 2174819 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||| | || ||||| || Sbjct 2174818 TTGGTCCTTCGTCTCCGTGGTGGTAT 2174793 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | ||||| || ||||| || | || Sbjct 2174338 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACGATTACGCTGGAAGTCGAGTCTTCT 2174279 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||| ||||||||||| || ||||| || || || ||| Sbjct 2174278 GATACCATCGACAACGTGAAGTCAAAGATTCAAGACAAGGAGGGCATCCCCCCTGACCAA 2174219 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| || || ||||| || || || |||| || |||||| Sbjct 2174218 CAACGCTTGATCTTTGCCGGAAAGCAGTTGGAGGATGGTCGTACTCTTTCTGACTACAAC 2174159 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| |||||| || | || ||||| || | | || |||||| Sbjct 2174158 ATTCAGAAGGAGAGCACTCTGCACTTGGTGCTGAGACTTCGTGGTGGC 2174111 >seq3 Length=7151654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || || |||||| |||| || || || || || | ||||| | || Sbjct 5522585 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTAGAGTCTTCCGATACTATC 5522526 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | |||||| || || |||||||| |||||||| ||||| |||||||| ||| | Sbjct 5522525 GACAACGTCAAATCCAAGATCCAAGACAAGGAAGGCATTCCACCAGATCAACAACGTCTG 5522466 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | |||||||||||| | || || | ||| | ||| ||||||||||| ||| Sbjct 5522465 ATCTTTGCCGGCAAACAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATTCAGAAG 5522406 Query 27177 G 27177 | Sbjct 5522405 G 5522405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918372817600