Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20sideris_20[genbank_20GCA_5F000835395.1_202015-02-23] 5 sequences; 29,505,589 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 152 1e-31 seq3 116 9e-21 seq2 109 1e-18 >seq1 Length=9941542 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| ||||| || |||||||| ||||| ||| | || ||||| || ||||||||| Sbjct 2175000 TCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATTGACAACGTCAAAT 2174941 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| |||||||| ||||| || || || || || ||||||||||||| Sbjct 2174940 CTAAGATCCAGGACAAGGAAGGAATTCCTCCCGATCAACAGCGTCTCATCTTCGCCGGAA 2174881 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||||||||| | || || |||||| ||| ||||||| || || ||||| | Sbjct 2174880 AGCAGCTCGAAGATGGCCGCACCCTGAGCGATTACAACATCCAAAAGGAGTCTACACTCC 2174821 Query 178123 AT 178124 || Sbjct 2174820 AT 2174819 Score = 149 bits (164), Expect = 2e-30 Identities = 159/209 (76%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 ||||| ||||| || ||||| || || || || |||||| | ||||| || |||| Sbjct 2174791 CAAATCTTCGTTAAGACTCTTACTGGCAAGACTATCACCTTGGAGGTTGAGTCAAGC--- 2174735 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| Sbjct 2174734 GACACTATCGATAATGTCAAGTCCAAGATTCAGGACAAGGAAGGCATTCCTCCCGACCAA 2174675 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 ||||| || ||||| ||||| ||||| || ||||| || | || || |||||| ||| Sbjct 2174674 CAACGTCTAATCTTTGCCGGCAAACAACTTGAAGACGGCCGAACCCTGAGCGATTACAAC 2174615 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || |||||||| || || |||||||| Sbjct 2174614 ATTCAGAAAGAATCTACCCTCCATCTTGT 2174586 >seq3 Length=7151654 Score = 116 bits (128), Expect = 9e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||||||||| || || || || ||| Sbjct 5522585 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTAGAGTCTTCCGATACTATC 5522526 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || ||||||||| ||||| || ||||| ||||| || || || || || ||||| || Sbjct 5522525 GACAACGTCAAATCCAAGATCCAAGACAAGGAAGGCATTCCACCAGATCAACAACGTCTG 5522466 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||||| ||||| ||||| ||||| ||||| Sbjct 5522465 ATCTTTGCCGGCAAACAACTCGAGGATGG 5522437 >seq2 Length=7897194 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| |||||||| || || |||||||| || || ||||||||||| || || ||||| Sbjct 2363821 GACAAGGAAGGAATTCCGCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTCGAG 2363762 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||| | |||||| |||| || ||| |||| || || || || ||||| |||||| | Sbjct 2363761 GATGGACGCACTCTTTCCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTTGTTCTC 2363702 Query 178134 AGACT 178138 |||| Sbjct 2363701 CGACT 2363697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731122885970