Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq4 114 1e-20 seq8 93.3 4e-14 seq7 87.8 2e-12 >seq1 Length=6183525 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || ||||| || || ||||||||||| |||| |||||| | | Sbjct 607586 ATGCAAATCTTTGTCAAGACGCTGACAGGAAAAACCATCACACTCGAAGTCGAATCATCT 607527 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| ||||| ||||| ||||| ||||||| Sbjct 607526 GACACCATTGACAACG-TGAAGAGCAAGATTCAAGACAAGGAGGGTATCCCACCGGACCA 607468 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| ||| || || || | || |||| || || || |||||||| Sbjct 607467 GCAACGCTTGATCTTCGCAGGGAAGCAATTAGAAGACGGTCGAACTCTTTCAGACTACAA 607408 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| || ||||| || || | || || || || Sbjct 607407 CATCCAGAAGGAATCCACTCTCCATCTCGTCCTGAGATTAAGAGGAGG 607360 Score = 120 bits (132), Expect = 3e-22 Identities = 141/188 (75%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| | || |||||| ||| ||| | | | | |||| ||||| Sbjct 608020 TCACCGGAAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATTGACAACG-TCAAG 607962 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| || || || || | |||||||| || || |||| ||| || Sbjct 607961 TCCAAGATTCAGGACAAGGAAGGAATTCCTCCTGACCAGCAGCGTCTTATCTTCGCTGGA 607902 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || |||| |||||||| | |||||||||||||||||| ||| |||| || Sbjct 607901 AAGCAACTTGAAGACGGCCGCACCCTGAGCGACTACAACATCCAGAAAGAGTCCACCCTC 607842 Query 40891 CATCTAGT 40898 ||||| || Sbjct 607841 CATCTTGT 607834 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 607814 ATGCAAATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAATCGTCT 607755 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | ||| || |||| || || || || || || | |||||| Sbjct 607754 GATACCATCGACAATGTAAAGAGCAAGATTCAGGATAAGGAAGGAATTCCTCCCGACCAG 607695 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || ||||| || || || || | || |||||| ||||||||| Sbjct 607694 CAACGCTTGATCTTTGCAGGCAAGCAACTTGAAGATGGTCGTACCCTCTCAGACTACAAC 607635 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| | || || || || || Sbjct 607634 ATTCAGAAGGAATCGACCCTTCACCTTGT 607606 Score = 91.5 bits (100), Expect = 2e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| ||||| | ||||| ||||||||||| | ||||| || ||| | || Sbjct 607286 AACG-TCAAGAGCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAACAGCGATTGAT 607228 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||||||| |||| || | ||||| ||| |||||||||||||||||||| Sbjct 607227 CTTTGCAGGCAAACAGTTGGAGGATGGTCGCACGCTCTCTGACTACAACATCCAGAAGGA 607168 >seq4 Length=3791951 Score = 114 bits (126), Expect = 1e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| || |||||| |||| || || | |||||| | | Sbjct 1156314 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCTTCCGACACCATC 1156255 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| || |||||||| | |||||||||||| | Sbjct 1156254 GACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATCCCACCTGACCAGCAACGATTG 1156195 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| || || || || || |||| || || |||| |||||||||||| |||||| Sbjct 1156194 ATCTTCGCCGGAAAGCAACTCGAGGACGGCCGAACACTCAGCGACTACAACATTCAGAAG 1156135 Query 40879 G 40879 | Sbjct 1156134 G 1156134 >seq8 Length=2671506 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || || || ||| | ||||||||||| || |||| ||| || || || || || Sbjct 921187 GACAAGGAAGGAATTCCCCCCGACCAGCAACGTCTGATCTTCGCCGGAAAGCAACTCGAG 921246 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||| ||| |||||||||||||||||||||| | || || || || || Sbjct 921247 GACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 921302 >seq7 Length=2764021 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| ||||| || || |||||||| | ||||||||| || || || ||||| Sbjct 773593 TACAAGAAGGCTGAAGCCAGCTTCTGGACAGCCGAGGAGGTCGATCTCTCAAAGGATCTT 773534 Query 116708 AGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 |||||| | || | |||||| | ||||| | ||| | || || || ||| Sbjct 773533 CATGACTGGCACAACCGGCTCAACGACGATGAGCGATACTTCGTGTCCCATGTTCTCGCC 773474 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || ||| ||| || ||||| |||||||||||| | ||||| ||| | || Sbjct 773473 TTCTTTGCTGCCTCCGATGGTATCGTGAACGAGAATCTGCTGGAGCGATTCAGCAACGAA 773414 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 |||||| | | ||||| || |||||||| || Sbjct 773413 GTGCAGATCCCAGAGGCTCGCTGCTTCTATGG 773382 Score = 86.0 bits (94), Expect = 6e-12 Identities = 174/253 (69%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 117116 GGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCAT 117175 |||||||||||||||||||||||| |||||| | ||||| | || ||||| |||| Sbjct 772966 GGCCTCATGCCCGGCCTGACTTTCTCTAACGAGTTGATCTCTCGTGATGAGGGCATGCAC 772907 Query 117176 TGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGC-GCGGCGCGCGT 117234 |||||| || ||| || || | |||| | ||| | | | ||| ||| || | Sbjct 772906 ACCGACTTCGCTTGTCTGTTGATGCAGCACCTCAAGCA-CAAGCCAGCTCCGGAGCTGAT 772848 Query 117235 CAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294 | | | || |||| || || || ||||||||| || ||| | || || || || || Sbjct 772847 CGAGAGGGTCATCACTGAAGCCGTTGCCATCGAGAAGGAATTCTTGACGGATGCACTTCC 772788 Query 117295 GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCG 117353 || || || || | || ||| || | ||| ||| |||||||| |||||||||| Sbjct 772787 AGTCGCCCTCCTCGGCATGAA-TGCCAAGCTCATGCAGCAGTACATCGAATTCGTCGCCG 772729 Query 117354 ACAGGCTGCTGCT 117366 | | || ||||| Sbjct 772728 ATCGTCTACTGCT 772716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219019673280