Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 seq2 93.3 4e-14 seq8 86.0 5e-12 >seq1 Length=6183525 Score = 98.7 bits (108), Expect = 9e-16 Identities = 133/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || |||||||| || |||||||| ||||||| ||||| || || | Sbjct 607835 CAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCTTCAA 607894 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 | || ||||||||| |||| ||||||||||| || ||||| || || |||||||| || Sbjct 607895 GTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGAA 607954 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | ||| || || |||||||| | ||| | || || | Sbjct 607955 TCTTGGACTTGACGTTGTCAATGGTATCGCTGGATTCGACCTCAAGGGTGATGGTCTTTC 608014 Query 118711 CGGT 118714 |||| Sbjct 608015 CGGT 608018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||| ||||||||| | || || || || |||||||| || Sbjct 607131 ACCGCCACGAAGTCTCAGCACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCAGA 607190 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||| | |||||| || || |||| | ||||| || || || || Sbjct 607191 GAGCGTGCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGG 607250 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||||||| ||||| || || | |||| ||| |||| ||| || Sbjct 607251 GATGCCCTCCTTGTCTTGGATTTTGCTCTTGACGTTGTCGATGGTATCCGATGACTCAAC 607310 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||| || || || | || || ||||| |||||||| Sbjct 607311 TTCCAGTGTAATCGTCTTTCCAGTTAATGTCTTGACAAAGATCTGCAT 607358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| | |||||||| || | |||| || || || || || |||||||| || Sbjct 607358 TACCTCCTCTTAATCTCAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTG 607417 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || | || || || ||| |||| | || ||||| || || | Sbjct 607418 AAAGAGTTCGACCGTCTTCTAATTGCTTCCCTGCGAAGATCAAGCGTTGCTGGTCCGGTG 607477 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || |||||||||||| ||| || || || | || | |||||| | || | ||| Sbjct 607478 GGATACCCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATGGTGTCAGATGAT-TCG 607536 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || | ||||| || ||||| || || ||||| || ||||| Sbjct 607537 ACTTCGAGTGTGATGGTTTTTCCTGTCAGCGTCTTGACAAAGATTTGCAT 607586 >seq2 Length=3929205 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 134118 TGATTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAATCG 134177 || || |||| || || |||||||| ||||| ||| |||||||| || | || || Sbjct 1716404 TGGTTTTTCTCAACACGCTTCATGAAAAGATCAGGAGTCCACAGGGCGTAGAATAGGTCA 1716345 Query 134178 CGAGCTTTAGTGTCTTCGGAGCCCATGTTGCGTCTCAAGTTGAGAAACTCATAAATTTCC 134237 ||||| ||||| ||| ||| |||||||| | ||| || | | ||| Sbjct 1716344 CGAGCACGGACTTCTTCTTTGCCGTGGTTCTTCCTCAAGTTCAAAAAGTCGAAGACATCC 1716285 Query 134238 GGATGCCACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTTA---CCACCCTGGTCG 134294 | |||||| ||||| | |||| ||||| ||||||| ||||| ||||| |||||| Sbjct 1716284 GCATGCCATGGCTCCAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCACCTTGGTCG 1716225 Query 134295 ACGTGACGCACCATGTTGTTGAAGACTCTCAACAT 134329 || | ||| | |||||||||||||||| | ||| Sbjct 1716224 ACATAACGTGCAGTGTTGTTGAAGACTCTTAGCAT 1716190 >seq8 Length=2671506 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| |||||||| || ||||| Sbjct 921290 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCGAGTTGCTTTCCG 921231 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| |||| ||||| ||||| ||||| || || || ||||||||||| Sbjct 921230 GCGAAGATCAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCTGT 921184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830251955376