Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 seq4 102 2e-16 >seq1 Length=6183525 Score = 127 bits (140), Expect = 5e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || |||||||| | ||| ||| || ||||| || ||||| | || || || || Sbjct 607371 TCTCAGGACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGACC 607430 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 |||||||||||| || ||||||||||||| || || || |||||| || || || Sbjct 607431 GTCTTCTAATTGCTTCCCTGCGAAGATCAAGCGTTGCTGGTCCGGTGGGATACCCTCCTT 607490 Query 288378 ATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGA 288436 || || || || ||| |||||||| || || | || ||||| |||||||| |||| Sbjct 607491 GTCTTGAATCTT-GCTCTTCACGTTGTCAATGGTGTCAGATGATTCGACTTCGAGTGTGA 607549 Query 288437 TCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| |||||||| || || ||||| Sbjct 607550 TGGTTTTTCCTGTCAGCGTCTTGACAAAGATTTGCAT 607586 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || ||||| | ||| || || || ||||| | ||| || ||||| || Sbjct 607623 TTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGACCATCTTCAAGTTGCTTGCCTGCAAA 607682 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGT 288400 ||||| || || || || |||||||| |||||||| || || ||| || || | Sbjct 607683 GATCAAGCGTTGCTGGTCGGGAGGAATTCCTTCCTTATCCTGAATCTT-GCTCTTTACAT 607741 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 | || || | ||| |||||| || ||||| ||||| ||||| ||||| || ||||||| Sbjct 607742 TGTCGATGGTATCAGACGATTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 607801 Query 288461 CGAATATCTGCAT 288473 |||| || ||||| Sbjct 607802 CGAAAATTTGCAT 607814 >seq4 Length=3791951 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || || || || |||||| ||| || || ||||| || | ||| ||||| ||||||||| Sbjct 1156136 TTCTGAATGTTGTAGTCGCTGAGTGTTCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 1156195 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | || || || | |||||| ||||| || |||||||| || | || || || || Sbjct 1156196 AATCGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1156255 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || ||||| ||||| ||||| || || || ||||||||||| Sbjct 1156256 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 1156314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653976798984