Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2 141 7e-28 seq1 111 1e-18 seq5 91.5 1e-12 >seq2 Length=3929205 Score = 141 bits (156), Expect = 7e-28 Identities = 395/598 (66%), Gaps = 15/598 (3%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 |||||||| ||| |||| || || || ||||| || ||| | | ||| | Sbjct 1850384 ATAGGTATCGATCTAGGTACAACCTACTCATGTGTGGGCATTTTCCGAGATGACCGCATC 1850325 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| |||||||| || ||||| ||| |||| || || || | || | || ||||| Sbjct 1850324 GAAATCATTGCCAACGACCAAGGCAACCGAACAACCCCTTCATTCGTCGCCTTTACGGAC 1850265 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | | |||||||| ||||| | |||| | | || ||| || || Sbjct 1850264 ACTGAGCGTCTGATCGGTGATGCTGCAAAGAACCAAGTCGCCATGAACCCTCAGAACACA 1850205 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || ||||| || || | || || ||| || | ||| | || ||||| ||| Sbjct 1850204 GTCTTCGATGCCAAGCGACTGATCGGCCGAAAGTTCACGGATGCCGAAGTCCAGGCTGAT 1850145 Query 550235 ATGAAGCATTGGCCTTTCCAA---ATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-C 550290 |||||||| | || ||| | || | || | | ||||| || || |||| | Sbjct 1850144 ATGAAGCACTTCCCATTCAAGGTCATCGACAAGGGT---GGAAAGCCAGTCATCGAAGTC 1850088 Query 550291 TACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAA 550349 | | | |||| | | || || || |||| ||| |||| ||||| ||||| || | Sbjct 1850087 GAGT--TCAAGGGCGAGGTCAAGCACTTCACACCCGAAGAAATCTCATCCATGGTCTTGA 1850030 Query 550350 TGAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 || |||| | | |||||| ||| || | | ||| || | | ||||| || Sbjct 1850029 CCAAGATGAGAGAGACAGCCGAGTCCTATC-TCGGTGGCACTGTCAACAACGCAGTCATC 1849971 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || ||||| || || ||||| ||||||||||| || || || ||||| | ||| Sbjct 1849970 ACTGTCCCTGCATACTTCAACGACTCTCAACGTCAAGCCACCAAGGACGCTGGTCTCATT 1849911 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || || || || || || || ||||| |||||||| || ||||| |||| || || Sbjct 1849910 GCCGGCCTCAACGTCCTCCGCATCATCAACGAACCTACCGCAGCTGCCATTGCCTACGGT 1849851 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT---TGTGGAGGTA 550583 ||||| || | | | || | ||||| |||||||| ||| ||||||||| Sbjct 1849850 CTTGACAAGAAGGCTACTGGCGAGCGCAATGTCCTCATCTTCGATCTCGGTGGAGGTA 1849793 >seq1 Length=6183525 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 |||||||| ||||| |||||||| ||| || ||| ||||| || | || || | Sbjct 607597 AGACGGAGGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGAGAGGGTACGA 607656 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||||||||| || || ||||| || | | |||||| || |||||||||||||| Sbjct 607657 CCATCTTCAAGTTGCTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATTCCTTCC 607716 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 ||||| ||||| || ||||| || || ||||||| || | | ||||| || Sbjct 607717 TTATCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAG-ACGATTCAACCTCGAGGGT 607775 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || || || || || || ||||||||||||||| Sbjct 607776 GATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCATA 607815 Score = 93.3 bits (102), Expect = 3e-13 Identities = 106/138 (77%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCT-AGAGT 563312 ||||||||| |||||||| ||||| ||| | | ||| || ||||| || ||| || || Sbjct 607824 GAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTC-GCTCAGGGT 607880 Query 563313 TCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCC 563372 | ||||||||||| ||||| || || ||||| | ||||| |||||||||||||| Sbjct 607881 GCGGCCGTCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATTCC 607940 Query 563373 TTCTTTATCTTGAATTTT 563390 ||| || || ||||| || Sbjct 607941 TTCCTTGTCCTGAATCTT 607958 >seq5 Length=3726234 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || || ||| || ||||||||||| || |||||||| | || Sbjct 176159 ACTGTCCCTGCCTACTTCAACGACATGCAGCGTCAAGCTACCAAGGATGCTGGTCAAATC 176100 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| ||||| ||||| ||| | |||| || |||||||| ||||| ||||| || || Sbjct 176099 GCTGGTCTTAACGTTCTCCGTGTCGTCAACGAGCCTACTGCCGCTGCGCTTGCCTACGGT 176040 Query 550529 CTTGATAA 550536 || || || Sbjct 176039 CTCGAAAA 176032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294519233720