Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2 150 1e-30 seq1 123 2e-22 >seq2 Length=3929205 Score = 150 bits (166), Expect = 1e-30 Identities = 329/488 (67%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| |||||||| |||||||| || ||||||| || |||| || | ||||| || Sbjct 1850324 GAAATCATTGCCAACGACCAAGGCAACCGAACAACCCCTTCATTCGTCGCCTTTACGGAC 1850265 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 ||||| | ||| || || |||||||| || | |||| || || ||| || || Sbjct 1850264 ACTGAGCGTCTGATCGGTGATGCTGCAAAGAACCAAGTCGCCATGAACCCTCAGAACACA 1850205 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || ||||| || || |||| || || || || ||| || ||||| ||||| Sbjct 1850204 GTCTTCGATGCCAAGCGACTGATCGGCCGAAAGTTCACGGATGCCGAAGTCCAGGCTGAT 1850145 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | ||||| || ||| || |||| | Sbjct 1850144 ATGAAGCACTTCCCATTCAAGGTCATCGACAAGGGTGGAAAGCCAGTCATCGAAGTCGAG 1850085 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || || || || |||| ||| |||| || || ||||| || ||| Sbjct 1850084 TTCAAG--GGCGAGGTCAAGCACTTCACACCCGAAGAAATCTCATCCATGGTCTTGACCA 1850027 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | | || || ||| || ||||| || || | | ||||| || ||| Sbjct 1850026 AGATGAGAGAGACAGCCGAG-TCCTATCTCGGTGGCACTGTCAACAACGCAGTCATCACT 1849968 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || ||||| || || || |||||||||||||| || || || || || ||||| Sbjct 1849967 GTCCCTGCATACTTCAACGACTCTCAACGTCAAGCCACCAAGGACGCTGGTCTCATTGCC 1849908 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || || || | || || || || ||||| || ||||| || |||| || |||||| Sbjct 1849907 GGCCTCAACGTCCTCCGCATCATCAACGAACCTACCGCAGCTGCCATTGCCTACGGTCTT 1849848 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1849847 GACAAGAA 1849840 >seq1 Length=6183525 Score = 123 bits (136), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| ||||| || ||| || || || || || | || || Sbjct 607594 CGAAGACGGAGGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGAGAGGGTA 607653 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||||||||||||||| || ||||| || | ||||| || || |||||||||||| Sbjct 607654 CGACCATCTTCAAGTTGCTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGAATTCCT 607713 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| || |||||||| || ||| || || ||||||| | | || ||| Sbjct 607714 TCCTTATCCTGAATCTTGCTCTTTACATTGTCGATGGTATCAGACGATTCAACCTCGAGG 607773 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| ||||||||||| Sbjct 607774 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTG 607811 Score = 116 bits (128), Expect = 2e-20 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCT-AGAG 480609 ||| |||||||| |||||||| || || ||||| | || || || ||| || | Sbjct 607821 ACGGAGACGGAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTC-GCTCAGGG 607879 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | |||||||||||||||||||| || |||||||| || || ||||||||||||| Sbjct 607880 TGCGGCCGTCTTCAAGTTGCTTTCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATTC 607939 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAA 480729 |||||||||| |||||||| ||||| ||||| ||||| || | |||| Sbjct 607940 CTTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATGGTATCGCTGGATTCGACCTCAA 607999 Query 480730 GGGTAATAGTTTTACCGGTGA 480750 |||| || || || ||||||| Sbjct 608000 GGGTGATGGTCTTTCCGGTGA 608020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177998944144