Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-22 seq3 122 1e-21 seq2 122 1e-21 >seq1 Length=6183525 Score = 123 bits (136), Expect = 3e-22 Identities = 94/111 (85%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||| ||||| || ||||||||| || ||||||| ||||||| ||| | || |||||| Sbjct 2770533 GCCGCAAACTATCTTGACATCAAGGCTTTGCTCGACGTTGGGTGTAAGACGGTCGCCAAC 2770592 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||||||||| |||||||||||||| || || || |||||| || Sbjct 2770593 ATGATCAAGGGCAAGTCTCCCGAGGAGATCCGGAAAACATTCAACATCCAG 2770643 Score = 86.0 bits (94), Expect = 8e-11 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 1726688 GGCTGG--GCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCC-ACGCTCCCGTCGGTGCCG 1726744 |||||| |||||||||| |||||||||| ||| ||| | | ||||| |||||| Sbjct 1201013 GGCTGGCCGCGGCGGCGCCGACGGCGTCGATGGCCA-CGCTGAGGGAGCCGTCTGTGCCG 1200955 Query 1726745 TTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCG 1726804 |||||||||||||||| | || ||| | || |||| ||||||||||| || ||| Sbjct 1200954 TTCTTGAAGCCGATGGGGAACGACAGACCAGAGGCCAGCTCGCGGTGCAGTTGCGATTCG 1200895 Query 1726805 GTCGTGCGCGCGCCCACGGCGCC 1726827 || || || ||||| | ||| || Sbjct 1200894 GTGGTTCGGGCGCCAATGGCACC 1200872 >seq3 Length=3924744 Score = 122 bits (134), Expect = 1e-21 Identities = 129/165 (78%), Gaps = 4/165 (2%) Strand=Plus/Plus Query 1726685 TGCGGCTGGGCGGCGGCGCGCACGGCGTCGAGTGCCGTCGCCACGC-TCCCGTCGGTGCC 1726743 ||||| || | |||||| | |||||||| || || |||| || | ||||||||||| Sbjct 3343393 TGCGGGTGCCTGACGGCGCCGATGGCGTCGA-TGGCGACGCCCAGCGTGCCGTCGGTGCC 3343451 Query 1726744 GTTCTTGAAGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTC 1726803 |||||||||||| | || | || ||| |||| |||| ||| || |||| ||||||||| Sbjct 3343452 GTTCTTGAAGCCCACGGGGAACGACAGGCCCGAGGCCAGCTCTCGATGCAGCTGGCTCTC 3343511 Query 1726804 GGTCGTGCGCGCGCCCACGGCGCCCCACGC-CACCAGGTCTGCCA 1726847 ||| ||||| ||||| |||||| || |||| || |||||| |||| Sbjct 3343512 GGTGGTGCGGGCGCCGACGGCG-CCGACGCTCAGCAGGTCAGCCA 3343555 >seq2 Length=3929205 Score = 122 bits (134), Expect = 1e-21 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || |||| ||| ||||| | |||||||| | |||||| ||||| Sbjct 1716230 TGGTCGACATAACGTGCAGTGTTGTTGAAGACTCTTAGCATGGGGATGAGGCCATTGGAG 1716171 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 ||||||||||| || | ||| | ||| | ||| || | ||| || | || Sbjct 1716170 GTACCGTTGGTGCCAGCAATGTATGAGCCAGTGGCACGAATGCAGTGAGCATTGAGACCA 1716111 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| || | ||||||||| | || || ||||| || |||||||||||||| Sbjct 1716110 ATACCGCCAGCGGTCTTGGAGATCATAGCACAGGTCTTGAGTGTATCGTAGATGCCCTCA 1716051 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| | | |||||| || || ||| || || | ||| || Sbjct 1716050 ATGCTGTCCTCCTTCATGTCAATCAAAAAGCATGAAGACAGTTGGGGCTGAGGCGTTCCA 1715991 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 || ||||| || || || Sbjct 1715990 GCATTGAACAGGGTAGG 1715974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136902188876