Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F000836115.1_202015-02-23] 28 sequences; 32,912,349 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq8 102 8e-17 seq4 102 8e-17 >seq1 Length=6183525 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || | | ||||| || || ||||| |||||||| ||||| ||||| ||| Sbjct 607132 CCGCCACGAAGTCTCAGCACCAAGTGTAGAGTGCTTTCCTTCTGGATGTTGTAGTCAGAG 607191 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || | ||| ||||| || || |||| ||||||||||| | || Sbjct 607192 AGCGTGCGACCATCCTCCAACTGTTTGCCTGCAAAGATCAATCGCTGTTGGTCAGGTGGG 607251 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| |||||| ||| ||| | | | || || ||||| || Sbjct 607252 ATGCCCTCCTTGTCTTGGATTTTGCTCTT-GACGTTGTCGATGGTATCCGATGACTCAAC 607310 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || ||||| || || || | ||||| || || |||||||| Sbjct 607311 TTCCAGTGTAATCGTCTTTCCAGTTAATGTCTTGACAAAGATCTGCAT 607358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | || || || || || |||||||||||||| ||||| ||| Sbjct 607588 CCGCCTCGAAGACGGAGGACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCTGAG 607647 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || || |||||||| || || |||| ||| || ||||| | ||| Sbjct 607648 AGGGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATCAAGCGTTGCTGGTCGGGAGGA 607707 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | | ||||| ||| || || ||| || | || | || || ||| || | Sbjct 607708 ATTCCTTCCTTATCCTGAATCTTGCTCTTTACATTGTCG--ATGGTATCAGACGATTCAA 607765 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || || || || || ||||| |||||||| ||||| Sbjct 607766 CCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATTTGCAT 607814 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||| ||||| ||||| || || || || |||| || Sbjct 607378 ACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAGTCTGAAAGAGTTCGACCGTCTTCT 607437 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||| || ||||| |||| ||| || ||||||| || | | ||||||||| Sbjct 607438 AATTGCTTCCCTGCGAAGATCAAGCGTTGCTGGTCCGGTGGGATACCCTCCTTGTCTTGA 607497 Query 41774 ATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||||| || | || | |||| || || || || | || || ||||| Sbjct 607498 ATCTTGCTCTTCA-CGTTGTCAATGGTGTCAGATGATTCGACTTCGAGTGTGATGGTTTT 607556 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||||||||| || || || ||||| Sbjct 607557 TCCTGTCAGCGTCTTGACAAAGATTTGCAT 607586 >seq8 Length=2671506 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || ||||||||| ||||| ||||||||| Sbjct 921320 CCACCACGCAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 921261 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| ||||| |||||||| ||||| || || ||||| | |||| Sbjct 921260 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCGGGGGGA 921201 Query 41756 ACGCTCTCCTTGTC 41769 | | |||||||| Sbjct 921200 ATTCCTTCCTTGTC 921187 >seq4 Length=3791951 Score = 102 bits (112), Expect = 8e-17 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 41669 CTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCG 41728 ||| ||||||||||||| |||||| ||| || || |||| ||||| ||||| |||||| Sbjct 1156130 CTCACCTTCTGAATGTTGTAGTCGCTGAGTGTTCGGCCGTCCTCGAGTTGCTTTCCGGCG 1156189 Query 41729 AATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CA 41786 || |||| || || ||||| | || | || ||||||||| ||| || ||| || Sbjct 1156190 AAGATCAATCGTTGCTGGTCAGGTGGGATGCCTTCCTTGTCCTGGATCTTGGACTTGACA 1156249 Query 41787 ACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCT 41846 | || | |||||| ||||||||||| | || || || || ||||| || |||| Sbjct 1156250 TTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCT 1156307 Query 41847 TTACGAA 41853 | ||||| Sbjct 1156308 TGACGAA 1156314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303838193600