Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 132 5e-26 seq3 91.5 2e-13 seq2 84.2 2e-11 >seq1 Length=5022262 Score = 132 bits (146), Expect = 5e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 2612021 ATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAATCTTCA 2612080 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| || || |||||||| || | ||||| Sbjct 2612081 GACACCATCGACAACG-TGAAGTCCAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCA 2612139 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || |||| ||| ||||| || || || |||| ||||||||| ||||||||| Sbjct 2612140 ACAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTCTCCGACTACAA 2612199 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || |||| || || || || Sbjct 2612200 CATCCAGAAAGAATCCACTCTCCACCTTGT 2612229 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| ||||| ||||||||| | || |||||| ||| ||| | | | | |||| ||||| Sbjct 2611815 TCACCGGCAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATCGACAACG-TCAAG 2611873 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || || | ||||| || ||||| ||| | || || || || ||||||| ||| || Sbjct 2611874 TCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAACAGCGCCTCATCTTCGCTGGT 2611933 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | ||||| || | |||||||||||| ||||||||| | || || Sbjct 2611934 AAGCAGCTTGAAGATGGCCGCACTCTGAGCGACTACAACATTCAGAAGGAGTCGACCTTG 2611993 Query 40891 CA 40892 || Sbjct 2611994 CA 2611995 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||||||||| ||||| |||| || ||| || | Sbjct 2612249 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACTATCACACTCGAAGTTGAATCCTCA 2612308 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | ||| || |||| |||||||| |||||||| | ||||| Sbjct 2612309 GACACAATCGACAACG-TAAAGAGCAAGATTCAAGACAAAGAAGGCATCCCACCCGACCA 2612367 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || || || |||| || | | || ||| || ||||| Sbjct 2612368 ACAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTCTCTCAGATTACAA 2612427 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||| || || ||||||| ||||| || ||| Sbjct 2612428 CATCCAAAAAGAATCCACGCTACATCTCGTCTTG 2612461 Score = 91.5 bits (100), Expect = 2e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| || || || | || ||||| | | Sbjct 2612477 ATGCAGATCTTTGTCAAGACTCTGACGGGCAAGACGATTACTTTGGAAGTCGAGTCATCT 2612536 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| || || | ||||| ||||| |||||| |||| || Sbjct 2612537 GATACCATTGACAACG-TCAAATCGAAGATCCAAGACAAGGAGGGTATCCCCCCGGATCA 2612595 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || ||| | |||| || ||||| ||| |||| || | || ||||| |||||||| Sbjct 2612596 ACAGCGATTGATCTTTGCAGGCAAGCAGTTGGAGGATGGCCGTACCCTGTCTGACTACAA 2612655 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||||| ||||| ||| || ||| | |||||| Sbjct 2612656 CATCCAAAAGGAAAGCACTCTCCATTTGGTGTTG 2612689 >seq3 Length=3603273 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/182 (72%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| | || || || | |||||| | | Sbjct 2486786 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCATCCGACACCATC 2486727 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| || || ||||| | || || || ||| | Sbjct 2486726 GACAACG-TCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAACAGCGATT 2486668 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 || | ||| || || || || || || | || ||||| | ||||||||||||||| || Sbjct 2486667 GATTTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAA 2486608 Query 40878 GG 40879 || Sbjct 2486607 GG 2486606 >seq2 Length=4816724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| |||||||||||| |||||||| | ||| || || || || ||||| ||| Sbjct 3365183 TACAAGAAGGCCGAGGCGAGCTTCTGGACAGCCGAAGAAGTCGATCTCTCCAAAGACCTC 3365242 Query 116708 AGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCC 116764 |||||| | || |||| || ||||| | | |||||| ||| | |||| Sbjct 3365243 CATGACTGGCACAACCGTCTGAATGATGACGAGAGATACTTCATCTCTCACATCTTGGCT 3365302 Query 116765 TTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAG 116824 || || || || || ||||| || |||||||||||| | ||||| ||| ||| Sbjct 3365303 TTCTTTGCTGCTTCAGATGGCATTGTAAACGAGAATCTGCTTGAGCGCTTCAGCGGTGAG 3365362 Query 116825 GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGG 116856 ||||| | | ||||| || |||||||| || Sbjct 3365363 GTGCAAATTCCAGAGGCCCGCTGCTTCTATGG 3365394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218955270880