Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq3 100 2e-16 >seq1 Length=5022262 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| || ||||| |||||||||||| || ||| |||| || ||||| Sbjct 2612224 GTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGTTG 2612165 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || |||||||| |||| || |||||||| ||||| | |||||||| ||| ||| || Sbjct 2612164 CTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTATCCTGAATCTT 2612105 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | |||| | || ||||| | ||| || |||||||| || Sbjct 2612104 GGACTTCACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTCTTGCCGGT 2612045 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||||||||| Sbjct 2612044 GAGGGTCTTGACAAAGATTTGCAT 2612021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || |||||||||||||||||||||| |||| ||| | || || Sbjct 2612001 ACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTCA 2611942 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| || | |||||||| ||||| || | || ||||||||| Sbjct 2611941 AGCTGCTTACCAGCGAAGATGAGGCGCTGTTGATCGGGGGGAATGCCTTCCTTGTCC 2611885 >seq3 Length=3603273 Score = 100 bits (110), Expect = 2e-16 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGA 45203 |||| || |||||||||||| |||| | ||| ||| ||| ||||| |||||||||| Sbjct 2486606 CCTTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCG---AGTTGCTTTCCGGCGA 2486662 Query 45204 ATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCG 45263 | ||||| |||||||| |||||||| | || |||||||| || || ||| || Sbjct 2486663 AAATCAATCGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACGT 2486722 Query 45264 CCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | |||| ||||||||| | ||| || ||||||||||| || ||||| | Sbjct 2486723 TGTCGATGGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 2486782 Query 45324 CAAAG 45328 | ||| Sbjct 2486783 CGAAG 2486787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075017030798