Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 149 1e-30 seq3 102 2e-16 seq5 86.0 1e-11 >seq1 Length=5022262 Score = 149 bits (164), Expect = 1e-30 Identities = 175/233 (75%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || ||||| | |||||||| | |||| |||||||||||| || || | Sbjct 2612479 CATG-CCACCTCGCAGTCTCAAGACGAGATGTAGCGTGGATTCTTTTTGGATGTTGTAAT 2612421 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| || | || ||||| ||||| |||||||| ||||||| || ||||| Sbjct 2612420 CTGAGAGAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGGTCGG 2612361 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGAT 288420 |||||| |||||||| || || || || ||| || ||||| || || | || ||| Sbjct 2612360 GTGGGATGCCTTCTTTGTCTTGAATCTT-GCTCTTTACGTTGTCGATTGTGTCTGAGGAT 2612302 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||||||| ||||| || || || || || ||||||||||| |||||||| Sbjct 2612301 TCAACTTCGAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 2612249 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | ||| |||||| ||||| || ||||||| | Sbjct 2612247 CCACCACGGAGCCGGAGAACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAG 2612188 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | ||| || || |||||||||||||| ||||| | || Sbjct 2612187 AGGGTGCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGA 2612128 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || | |||||||| || || | || ||||| || Sbjct 2612127 ATGCCCTCCTTATCCTGAATCTTGGACTTCACGTTGTCGATGGTGTCTGAAGATTCGACC 2612068 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || |||||||| || || ||||| Sbjct 2612067 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2612021 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || || ||||| | || | ||| | |||||||| |||||||| || ||||| | Sbjct 2612703 CCGCCACGAAGTCTCAACACCAAATGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGAC 2612644 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || || || || ||||| ||||||| ||||||||| ||| Sbjct 2612643 AGGGTACGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGGGGG 2612584 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| |||| ||| ||||| || || | ||| || || ||| Sbjct 2612583 ATACCCTCCTTGTCTTGGATCTTCGATTTGACGTTGTCAATGGTATCAGATGACTCGACT 2612524 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || |||||||| || |||||||||||||| || |||||||| Sbjct 2612523 TCCAAAGTAATCGTCTTGCCCGTCAGAGTCTTGACAAAGATCTGCAT 2612477 >seq3 Length=3603273 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || |||||| || || || || || || | ||| ||||| ||||| ||| Sbjct 2486608 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 2486667 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||||||| ||||||||||| || || ||||| || | || ||||| || Sbjct 2486668 AATCGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 2486727 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || || || ||||| ||||| || || || ||||||||||| Sbjct 2486728 ATGGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 2486786 >seq5 Length=2876130 Score = 86.0 bits (94), Expect = 1e-11 Identities = 274/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 || || || |||||||||| |||||| | |||||| || ||| | ||||| | Sbjct 1091125 ACAATGGGAGTGATGAACTCTACCAAGAAATCCGGAATTCTAAGCAGACTTGGGAACTGG 1091184 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 || | |||||| || | | || ||||| | |||||| |||| |||||| Sbjct 1091185 ACTTGCAGAAAGTTGATCAACAAGCCCTTGATGTGGCTACCGTCATGATCCTGATCGGTC 1091244 Query 326084 ATGATCATCACATGACCGTAACGAA-GCGAGGACGTGTCTTTGTACACTTTACCGGTTTG 326142 |||||||| | |||| || |||| || | | |||| | || ||||| | || Sbjct 1091245 ATGATCATTAAGCGACCATATCGAAGGCCTTGTC-TGTCAGTATAGACTTTCTTGTGCTG 1091303 Query 326143 AAGGCCGA-GAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG--CCAC 326199 ||| |||| ||| || || | ||| || || | ||||||| ||| ||| | | Sbjct 1091304 AAGACCGAGGAAGTTCTTGATGTTCTG-AATCTCAGCATTCTTCGAGAT--TTGGTCAAT 1091360 Query 326200 GGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCG 326259 || || || || |||||||| ||||| || |||||||| ||||| || | ||| | Sbjct 1091361 TGACGCGTCTCGCACGTTCAAGAGTTTGCCTCGAAGAGGAAACACCCCCCACAAGTCGGG 1091420 Query 326260 ACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAAT 326319 ||| || || || | ||||| || ||||| || ||||| || || ||||| || Sbjct 1091421 ACCCACGACTGATCGACCTGCCATAGCAAGACCTTTGGCCGAATCACCTTCAGTCAGGAT 1091480 Query 326320 GAGAGTGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTGGGA 326377 || |||||| | | || | | || || ||| | ||||| | ||||||||| Sbjct 1091481 CAGTGTGCACTTGTGGCCCTCTCTGGTGCCGGCCTTGTTTGCATCAGTCAGTTTGGGA 1091538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653825655764