Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 163 6e-35 seq2 122 2e-22 seq5 84.2 5e-11 >seq1 Length=5022262 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| |||||||| ||||| || || ||||| |||| || || | || ||||| Sbjct 2612230 AACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTC 2612171 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || |||||||| || ||||||||||| ||||||||||| || || || || Sbjct 2612170 GAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTATCCTG 2612111 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| || |||||||| ||| ||| || |||||||| | ||||| Sbjct 2612110 AATCTTGGACTTCACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTCTT 2612051 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | |||||| Sbjct 2612050 GCCGGTGAGGGTCTTGACAAAGATTTGCAT 2612021 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || || || ||||| |||||||| || |||||||| | |||||||| Sbjct 2612466 AGTCTCAAGACGAGATGTAGCGTGGATTCTTTTTGGATGTTGTAATCTGAGAGAGTTCTG 2612407 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | ||||| ||||| ||||| | |||||||||||| || || ||||||||| Sbjct 2612406 CCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGGTCGGGTGGGATGCCTTCT 2612347 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || ||| ||||| || || ||||| || ||| ||||| || || Sbjct 2612346 TTGTCTTGAATCTTGCTCTTTACGTTGTCGATTGTGTCTGAGGATTCAACTTCGAGTGTG 2612287 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | || || ||||| | ||||| Sbjct 2612286 ATAGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 2612249 Score = 123 bits (136), Expect = 6e-23 Identities = 139/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | || ||||| || ||||| ||||| ||| ||||| | |||||||| Sbjct 2612002 AACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGGCCATCTTC 2611943 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| |||||||| || || ||||| || || ||||||||||| ||||| || Sbjct 2611942 AAGCTGCTTACCAGCGAAGATGAGGCGCTGTTGATCGGGGGGAATGCCTTCCTTGTCCTG 2611883 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||| || ||||| || ||| || |||||||| | ||||| Sbjct 2611882 GATCTTGGACTTGACGTTGTCGATGGTATCGCTGGATTCGACCTCAAGGGTGATGGTCTT 2611823 Query 195111 TCCTGT 195116 || || Sbjct 2611822 GCCGGT 2611817 >seq2 Length=4816724 Score = 122 bits (134), Expect = 2e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||| || ||||| ||||| |||| |||||| | ||||||||| Sbjct 234628 ACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGTGCGGCCATCTTCG 234569 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || ||||| || |||||||| || ||||||||||| |||||||| ||||| |||||| Sbjct 234568 AGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTGTCT 234512 >seq5 Length=2876130 Score = 84.2 bits (92), Expect = 5e-11 Identities = 187/277 (68%), Gaps = 8/277 (3%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGT-GA-AAGA--CAATGGGGA 160644 ||||| || |||||||| | || || ||||||| | || || |||| ||| || Sbjct 2652107 TTCTATGCTCTCTGGACTCCTGACCTGTTCATGAGCCGCGTCGAGAAGAACCAA----GA 2652162 Query 160645 TTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTT 160704 |||| ||| ||||| || |||| || || || |||| |||||| ||||| ||||| Sbjct 2652163 CTGGACCCTCTTCTGCCCTCATGAGGCACCGGGTCTTGCTGATGTCTATGGCGAGGAGTT 2652222 Query 160705 CGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCA 160764 ||| |||| || || |||| ||||| |||||| | | || | | ||||| || Sbjct 2652223 TGAGGCTCTCTACGAGCGATATGAAAAGGAGGGACGTGGTCGCCAGACCATCAAGGCTCA 2652282 Query 160765 AGAACTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATA 160824 || ||||| || || |||| || ||| |||| |||| || | ||| || Sbjct 2652283 GAAATTGTGGTATGCTATTCTTGAAGCACAAACCGAGACCGGTACTCCGTATATGCTTTA 2652342 Query 160825 CAAGGATGCCATCTGTCGCAAGAGTAACCAGAAGAAC 160861 ||||||||| | ||||| |||||||||||| Sbjct 2652343 CAAGGATGCATGCAACAAGAAGAGCAACCAGAAGAAC 2652379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481059821146