Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 165 5e-35 seq1 96.9 2e-14 seq3 91.5 1e-12 seq2 86.0 4e-11 >seq4 Length=3308965 Score = 165 bits (182), Expect = 5e-35 Identities = 330/487 (68%), Gaps = 4/487 (1%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| ||||||||||||||||| || ||||||| || || | || | || || || Sbjct 495799 GAAATCATTGCCAATGACCAAGGCAACCGAACAACTCCCTCCTTCGTGGCCTTCACAGAC 495740 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| ||||| |||||||| || | |||| || || |||| || ||| Sbjct 495739 ACCGAGCGTCTCATTGGTGATGCTGCAAAGAACCAAGTCGCTATGAACCCTGCCAACACT 495680 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || || || |||||||||| || || || |||| | || || |||| Sbjct 495679 GTTTTCGACGCCAAGCGATTGATTGGCCGGAAATTCAGTGATGCTGAGGTTCAGGCTGAC 495620 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAG--CAA 474629 ||| |||| || || ||||| || | || || |||||| || |||| || Sbjct 495619 ATGAAGCATTTCCCCTTCAAGGTCATCGACAAGGGCGGCAAACCAGTCATTGAAGTCGAA 495560 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || ||||| |||||||| |||| ||| | || || || ||||| || | | Sbjct 495559 TTCAAG--GGCGAAACAAAACAATTCACACCAGAAGAGATCTCCTCGATGGTCTTGACAA 495502 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 | |||| | | ||||| |||||||| || || | | || || | || | Sbjct 495501 AGATGAGAGAGACCGCTGAATCATATCTCGGCGGCACTGTCAACAACGCCGTCGTCACAG 495442 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 | || || || || || || |||| | || || || ||||| || || ||||| | Sbjct 495441 TCCCTGCCTACTTCAACGACAGTCAAAGACAGGCCACAAAAGACGCCGGCCTCATTGCCG 495382 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 |||| || || | ||||| || || ||||| || ||||| || |||| |||||||||| Sbjct 495381 GTCTCAACGTCCTCCGTATCATCAACGAACCCACCGCAGCTGCCATTGCCTATGGTCTTG 495322 Query 474870 ATAAGAA 474876 ||||||| Sbjct 495321 ATAAGAA 495315 >seq1 Length=5022262 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||| | ||||||||| |||||| | ||||||||| ||||| || | |||||| Sbjct 2612427 TTGTAATCTGAGAGAGTTCTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGT 2612368 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || || || ||||| |||||||||||||| || || || || || || Sbjct 2612367 TGGTCGGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTCTTTACGTTGTCGATTGTGTCT 2612308 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | ||| || || |||||||| || || || ||||| ||||| || || Sbjct 2612307 GAGGATTCAACTTCGAGTGTGATAGTTTTGCCCGTAAGGGTCTTGACGAAGATCTG 2612252 Score = 93.3 bits (102), Expect = 3e-13 Identities = 155/225 (69%), Gaps = 12/225 (5%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| || ||||| ||||| || || || |||||| | || || || | || || Sbjct 2612242 ACGGAGCCGGAGAACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGT 2612183 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||| |||||||| || || || || ||||||||||| ||||||||||| || Sbjct 2612182 GCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATGCC 2612123 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTT----- 480725 ||||| || |||||||| || || || || |||| ||||| | Sbjct 2612122 CTCCTTATCCTGAATCTTGGACTTCACGTTGTCGAT------GGTGTCTGAAGATTCGAC 2612069 Query 480726 -TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||||| || || || |||||||| ||||| || || ||||| Sbjct 2612068 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATTTG 2612024 >seq3 Length=3603273 Score = 91.5 bits (100), Expect = 1e-12 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 || |||| | ||| || ||||||||||| || ||||| | || |||||||| ||||| Sbjct 2486629 AGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAATCGCTGTTGATCGGGAGGG 2486688 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGT 480724 ||||||||||||||||| ||||| ||||| || || || || | || | | Sbjct 2486689 ATTCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGATGACTCCA-C 2486747 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 |||||||| || || || || ||||| ||||| ||||| Sbjct 2486748 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 2486786 >seq2 Length=4816724 Score = 86.0 bits (94), Expect = 4e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| | | |||||| |||||||| || || || || ||||||||||| ||||||||| Sbjct 234586 AGAGTGCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGA 234527 Query 480666 ATTCCTTCCTTGTCT 480680 ||||||||||||||| Sbjct 234526 ATTCCTTCCTTGTCT 234512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177569995624