Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 163 3e-35 seq3 95.1 1e-14 >seq1 Length=5022262 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || |||||||| || |||||||| ||| || | Sbjct 2612249 ATGCAGATCTTCGTCAAGACCCTTACGGGCAAAACTATCACACTCGAAGTTGAATCCTCA 2612308 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | ||||| ||||| |||||||||||||| || || ||||| ||| Sbjct 2612309 GACACAATCGACAACGTAAAGAGCAAGATTCAAGACAAAGAAGGCATCCCACCCGACCAA 2612368 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||||||||| || || || |||| ||| |||| | |||||||| ||| Sbjct 2612369 CAACGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTCTCTCAGATTACAAC 2612428 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||| ||||| || ||||| | || ||| || |||| || ||| Sbjct 2612429 ATCCAAAAAGAATCCACGCTACATCTCGTCTTGAGACTGCGAGGTGGC 2612476 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| | ||||| || | | Sbjct 2612477 ATGCAGATCTTTGTCAAGACTCTGACGGGCAAGACGATTACTTTGGAAGTCGAGTCATCT 2612536 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||||||||||||| || || || || || |||||| Sbjct 2612537 GATACCATTGACAACGTCAAATCGAAGATCCAAGACAAGGAGGGTATCCCCCCGGATCAA 2612596 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||||||| || || ||| |||||||| | | | |||| || || ||| Sbjct 2612597 CAGCGATTGATCTTTGCAGGCAAGCAGTTGGAGGATGGCCGTACCCTGTCTGACTACAAC 2612656 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||||||||| || || || ||||||||| || | || || ||| Sbjct 2612657 ATCCAAAAGGAAAGCACTCTCCATTTGGTGTTGAGACTTCGTGGCGGC 2612704 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || ||| ||| ||| || | || | || || Sbjct 2611817 ACCGGCAAGACCATCACCCTTGAGGTCGAATCCAGCGATACCATCGACAACGTCAAGTCC 2611876 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || ||||||||||| || | ||||| || || || Sbjct 2611877 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAACAGCGCCTCATCTTCGCTGGTAAG 2611936 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || ||| | | || || || |||||||| ||||| ||||| | ||| Sbjct 2611937 CAGCTTGAAGATGGCCGCACTCTGAGCGACTACAACATTCAGAAGGAGTCGACCTTGCAC 2611996 Query 24908 TTGGT 24912 ||||| Sbjct 2611997 TTGGT 2612001 >seq3 Length=3603273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || || || || || || || || || || | ||||||| | || | Sbjct 2486780 AAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCATCCGACACCATCGACAAC 2486721 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| |||||||| |||||||||||||| || ||||| || Sbjct 2486720 GTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAACAGCGATTGATTTTC 2486661 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGG 24893 ||||| || || || |||||| ||| | || || || ||||| ||||||| Sbjct 2486660 GCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAAGG 2486606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897386298640