Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 188 2e-42 seq3 129 1e-24 seq2 125 2e-23 seq5 84.2 5e-11 >seq1 Length=5022262 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| |||||||| ||||| |||||||| || || | ||||| | || ||| Sbjct 2612232 AGAACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 2612173 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| || ||||||||||||||||||| || ||||| ||| Sbjct 2612172 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTATCC 2612113 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| |||||||| ||||||||||| || ||| ||||| || ||||| ||| Sbjct 2612112 TGAATCTTGGACTTCACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTC 2612053 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | ||||| Sbjct 2612052 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2612021 Score = 168 bits (186), Expect = 2e-36 Identities = 170/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| | ||| || || || ||||| |||||||||||||| ||||| | || || Sbjct 2612469 CGCAGTCTCAAGACGAGATGTAGCGTGGATTCTTTTTGGATGTTGTAATCTGAGAGAGTT 2612410 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 || |||||||||| ||||| ||||| ||||| | ||||||||||| || || | ||| Sbjct 2612409 CTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGGTCGGGTGGGATGCCT 2612350 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| || ||||| || ||||| ||||| ||||| ||| |||||| ||||| Sbjct 2612349 TCTTTGTCTTGAATCTTGCTCTTTACGTTGTCGATTGTGTCTGAGGATTCAACTTCGAGT 2612290 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || ||||| || || | |||||| Sbjct 2612289 GTGATAGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 2612249 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || | || |||||| || ||||||||||| || || | ||||| Sbjct 2612698 ACGAAGTCTCAACACCAAATGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGACAGGGT 2612639 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| |||||||||||| ||||| | || ||||| || || || | || Sbjct 2612638 ACGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGGGGGATACC 2612579 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| ||| ||||| || ||||| ||||| || || || | Sbjct 2612578 CTCCTTGTCTTGGATCTTCGATTTGACGTTGTCAATGGTATCAGATGACTCGACTTCCAA 2612519 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| |||||||| ||||| |||||||| ||||| | |||||| Sbjct 2612518 AGTAATCGTCTTGCCCGTCAGAGTCTTGACAAAGATCTGCAT 2612477 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | ||| | || ||||| || || ||||| || || || || Sbjct 2612014 ACGAAGACGAAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGT 2611955 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| || |||||||| ||||| ||||| || || |||| || Sbjct 2611954 GCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGTTGATCGGGGGGAATGCC 2611895 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| || ||||| |||||||| || | ||| ||||| || Sbjct 2611894 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGCTGGATTCGACCTCAAG 2611835 Query 211073 AGTGATCGTCTTTCCCGTGA 211092 ||||| ||||| || |||| Sbjct 2611834 GGTGATGGTCTTGCCGGTGA 2611815 >seq3 Length=3603273 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || || ||||| | ||||| || || ||||| || ||||| || Sbjct 2486608 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 2486667 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || ||||| || ||||| | |||||||||||| |||||||| || ||||| ||| Sbjct 2486668 AATCGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 2486727 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 2486728 ATGGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 2486786 >seq2 Length=4816724 Score = 125 bits (138), Expect = 2e-23 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| ||||| || || ||||| || || ||||| || || | ||| || Sbjct 234641 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT 234582 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||| |||||||| || ||||||||||||||||||| ||| Sbjct 234581 GCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATTCC 234522 Query 211013 TTCCTTGTC 211021 ||||||||| Sbjct 234521 TTCCTTGTC 234513 >seq5 Length=2876130 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 178237 GTAGAGCTCCTCGAATTCCGGTCCATAGACATCATCGAGACCGGGAGCCTCATTGGGGCA 178296 |||||| |||| || ||| |||||||||||| | ||||| || ||||||| ||||| Sbjct 2652235 GTAGAGAGCCTCAAACTCCTCGCCATAGACATCAGCAAGACCCGGTGCCTCATGAGGGCA 2652176 Query 178297 GAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGAT 178356 |||||| |||| | || | || || || ||||||| ||||||| ||||||| Sbjct 2652175 GAAGAGGGTCCAGTCTTGGTTCTTCTCGACGCGGCTCATGAACAGGTCAGGAGTCCAGAG 2652116 Query 178357 GGCATAGAA 178365 |||||||| Sbjct 2652115 AGCATAGAA 2652107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151435637870