Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 165 2e-35 seq3 120 7e-22 seq2 109 1e-18 >seq1 Length=5022262 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||||| ||| || || || |||||||||||||||| |||||||| | | |||| Sbjct 2612469 CGCAGTCTCAAGACGAGATGTAGCGTGGATTCTTTTTGGATGTTGTAATCTGAGAGAGTT 2612410 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | ||||| || || ||||| | ||||||||||||||| || || ||| Sbjct 2612409 CTGCCATCTTCCAATTGCTTTCCTGCAAAGATCAATCGTTGTTGGTCGGGTGGGATGCCT 2612350 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||| ||||| ||| || ||||| |||||||||| ||| || || | Sbjct 2612349 TCTTTGTCTTGAATCTTGCTCTTTACGTTGTCGATTGTGTCTGAGGATTCAACTTCGAGT 2612290 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || |||||||| | || || | ||| | ||||| Sbjct 2612289 GTGATAGTTTTGCCCGTAAGGGTCTTGACGAAGATCTGCAT 2612249 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||||||||||||||||||||| |||| ||||| |||| | || | || ||| Sbjct 2612232 AGAACAAGGTGGAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 2612173 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||||||||| || ||||| || ||||| || Sbjct 2612172 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATGCCCTCCTTATCC 2612113 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| |||||||||||||| | ||| || || | ||||| ||| Sbjct 2612112 TGAATCTTGGACTTCACGTTGTCGATGGTGTCTGAAGATTCGACCTCAAGGGTGATGGTC 2612053 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | || | |||||| Sbjct 2612052 TTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 2612021 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || | ||||||||| ||| ||||||| ||||| || | || || Sbjct 2612698 ACGAAGTCTCAACACCAAATGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCAGACAGGGT 2612639 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | |||||| || || ||||| | ||| ||||| || || || ||||| Sbjct 2612638 ACGGCCATCCTCCAACTGCTTGCCTGCAAAGATCAATCGCTGTTGATCCGGGGGGATACC 2612579 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| || || || ||||| || || | || || || || Sbjct 2612578 CTCCTTGTCTTGGATCTTCGATTTGACGTTGTCAATGGTATCAGATGACTCGACTTCCAA 2612519 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || |||||||||||||||| ||| || Sbjct 2612518 AGTAATCGTCTTGCCCGTCAGAGTCTT 2612492 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || || || || || | ||||| ||| || ||| Sbjct 2612014 ACGAAGACGAAGAACCAAGTGCAAGGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGT 2611955 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || ||||| ||||| ||||| || Sbjct 2611954 GCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGGCGCTGTTGATCGGGGGGAATGCC 2611895 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| || |||||||| || || ||| || || | Sbjct 2611894 TTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTATCGCTGGATTCGACCTCAAG 2611835 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 2611834 GGTGATGGTCTTGCCGGT 2611817 >seq3 Length=3603273 Score = 120 bits (132), Expect = 7e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| ||| || |||| ||||| || || ||||| || ||||| || Sbjct 2486608 TTTTGGATGTTGTAGTCGCTCAGGGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATC 2486667 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| ||||| ||||| || || |||||||||||||||||||| ||| || ||| Sbjct 2486668 AATCGCTGTTGATCGGGAGGGATTCCTTCCTTGTCTTGGATCTTGGACTTGACGTTGTCG 2486727 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| || | ||||| || | ||||| ||||||||||| Sbjct 2486728 ATGGTGTCGGATGACTCCACCTCAAGGGTGATGGTCTTGCCCGT 2486771 >seq2 Length=4816724 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| |||||||| || || || || || | ||||| |||| | ||| Sbjct 234641 ACGGAGTCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAAAGAGT 234582 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| || |||||||| || ||||||||||| || ||||| || Sbjct 234581 GCGGCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGTTGGTCAGGAGGAATTCC 234522 Query 225612 TTCCTTGTCT 225621 |||||||||| Sbjct 234521 TTCCTTGTCT 234512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530619386372