Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Exophiala_20spinifera_20[genbank_20GCA_5F001599535.1_202016-03-01] 38 sequences; 32,702,796 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 181 3e-40 seq3 138 3e-27 seq2 96.9 8e-15 >seq1 Length=5022262 Score = 181 bits (200), Expect = 3e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| ||||| ||||| || ||| ||||||| Sbjct 2612252 CAGATCTTCGTCAAGACCCTTACGGGCAAAACTATCACACTCGAAGTTGAATCCTCAGAC 2612311 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || |||||||| ||||||||||| ||||| || ||||| ||| Sbjct 2612312 ACAATCGACAACGTAAAGAGCAAGATTCAAGACAAAGAAGGCATCCCACCCGACCAACAA 2612371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || ||||| || | |||||||| || ||||| | ||||| ||| || Sbjct 2612372 CGATTGATCTTTGCAGGAAAGCAATTGGAAGATGGCAGAACTCTCTCAGATTACAACATC 2612431 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| || || ||||| || |||||||| Sbjct 2612432 CAAAAAGAATCCACGCTACATCTCGTCTTGAGACT 2612466 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| || || || |||||||| ||||| ||| |||||| Sbjct 2612024 CAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAATCTTCAGAC 2612083 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||||||||| || || || || ||||| ||||| ||| Sbjct 2612084 ACCATCGACAACGTGAAGTCCAAGATTCAGGATAAGGAGGGCATTCCTCCTGACCAACAA 2612143 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || || |||||||| || | || || |||| || ||| || Sbjct 2612144 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGACGGCCGCACCCTCTCCGACTACAACATC 2612203 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || |||||||| || || || |||||| Sbjct 2612204 CAGAAAGAATCCACTCTCCACCTTGTT 2612230 >seq3 Length=3603273 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| |||||||| || ||||||||| Sbjct 2486786 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCATCCGACACCATC 2486727 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || |||||||| ||||| || ||||| |||||||||||||| || || || ||| | Sbjct 2486726 GACAACGTCAAGTCCAAGATCCAAGACAAGGAAGGAATCCCTCCCGATCAACAGCGATTG 2486667 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||| || ||||| ||||| | || || ||| || ||| ||||||| Sbjct 2486666 ATTTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTGAGCGACTACAACATCCAAAA 2486608 >seq2 Length=4816724 Score = 96.9 bits (106), Expect = 8e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| |||||||| ||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 234513 GACAAGGAAGGAATTCCTCCTGACCAACAACGTCTGATCTTCGCCGGCAAGCAACTCGAA 234572 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||| | |||||| |||| || ||| | || || || || || || || || || Sbjct 234573 GATGGCCGCACTCTTTCCGACTACAACATTCAGAAGGAGTCGACCCTCCACCTCGT 234628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730613933372