Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq50 179 4e-40 seq4 147 2e-30 seq1 145 8e-30 >seq50 Length=290317 Score = 179 bits (198), Expect = 4e-40 Identities = 211/285 (74%), Gaps = 3/285 (1%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| ||||||||||| | ||||||| | |||||| Sbjct 112258 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACAGCCGAGGAGATCGACCTG 112317 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | | | |||||| | ||| | |||||| Sbjct 112318 TCCAAGGACCTCCACGACTGGAACAACAAGCTCAACGACGATGAGAAGTACTTCATCTCA 112377 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 || | || ||||| || |||||| || ||||||||||||||||| |||| ||||| Sbjct 112378 CATATCCTCGCCTTCTTTGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGTGGAGCGC 112437 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| || || ||||| ||||||| || ||||||||||| ||||||||| ||| Sbjct 112438 TTCAGCGGCGAAGTCCAGGTTCCCGAGGCCCGTTGCTTCTACGGATTTCAGATCATGATG 112497 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || ||| ||| |||||||| ||| Sbjct 112498 GAGAACATCCACTCTGAGACCTACTCGCTCCTGATCGACACCTAC 112542 Score = 170 bits (188), Expect = 2e-37 Identities = 316/456 (69%), Gaps = 6/456 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCG-CCTTCGGCGAGCGC 117040 |||||||||| ||||| ||| ||||| | | || ||| | || |||| | | ||| Sbjct 113111 AGAAGGCCGACTGGGCTCTGAAGTGGATTTCGGACA-AGAAGTCGACCTTTGCCTCGCGA 113169 Query 117041 CTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTT 117100 || | |||||||| ||||||||||| ||||||| || || ||| | || || Sbjct 113170 CTCATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCTATCTTC 113229 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGG 117160 ||||| ||||| |||||||| ||||||||||| || ||| ||||||||||||||| | Sbjct 113230 TGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTTACCTTCTCCAACGAGCTCATCTCTCGT 113289 Query 117161 GACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCG 117220 || ||||| ||||| |||||||||||| | || ||| || || | | | || Sbjct 113290 GATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACAGGCCC 113349 Query 117221 AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 ||| | || ||||||| || ||| || ||| |||||||| ||||| Sbjct 113350 AGCAAGCAAATGATCGAGGAGATCATCGTCGATGCCGTCAAGATCGAGCAAGAGTTCCTG 113409 Query 117281 ACCGAAGCGCTGCCG-GTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || |||||| |||| |||||| || | || | |||| | ||| ||| |||| Sbjct 113410 ACCGAGGCCCTGCCGTGTGC-TCTGCTCGGTATGAACT-CGAACCTCATGAAGCAGTACA 113467 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 ||||||| || || ||| | || ||| | | || | | || |||| |||| | | Sbjct 113468 TCGAGTTTGTGGCAGACCGCCTCCTGGTTGCTCTCGGCAACGACAAGGTCTACCGCGCAT 113527 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||||||| | || || ||| | ||||||| ||| Sbjct 113528 CCAACCCCTTCGATTTCATGGAGAACATCTCCCTGG 113563 >seq4 Length=1956354 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | | | Sbjct 193212 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGAGC 193153 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 193152 GACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 193093 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || ||| |||||| Sbjct 193092 CAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 193033 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| ||||||||| || ||| |||| || | || || ||| Sbjct 193032 ATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGC 192982 >seq1 Length=4491949 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 3513396 ATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACGCTGGAAGTCGAGTCATCA 3513455 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| |||||||||||| ||||||| Sbjct 3513456 GACACGATTGACAACG-TCAAGAGCAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCA 3513514 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| |||||||| |||||||| || | |||||||| || ||||| Sbjct 3513515 GCAACGTTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGTCGCACCCTGTCGGATTACAA 3513574 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||| || || || ||| | ||| || | || ||| Sbjct 3513575 CATCCAGAAGGAGAGCACCCTCCACCTGGTGCTTCGCCTGCGCGGTGGC 3513623 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || ||||||||||| |||| |||||| | || Sbjct 3513624 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATCC 3513683 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || |||| | ||| || || | |||||||||||||| || ||||||| Sbjct 3513684 GATACGATTGATAACG-TGAAGAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGACCA 3513742 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||||||||| |||||||| || | |||||| | |||||||| Sbjct 3513743 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTACAA 3513802 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | || || || || || |||| Sbjct 3513803 CATCCAGAAGGAGTCGACTCTCCACCTGGTCCTGCG 3513838 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| | || || || | | Sbjct 3513168 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCG 3513227 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || |||| ||||| ||||| ||||| | |||||| Sbjct 3513228 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 3513287 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || || || || || | || || || |||||||||| Sbjct 3513288 CAGCGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAAC 3513347 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 || ||||||||| ||| ||||| || || | ||| | | |||||| Sbjct 3513348 ATTCAGAAGGAGAGCACCCTGCACCTCGTCCTCCGCCTCCGTGGCGGC 3513395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217609260720