Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 113 4e-20 seq4 111 1e-19 seq48 98.7 9e-16 seq10 93.3 4e-14 >seq1 Length=4491949 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118547 CTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTA 118606 ||| || ||||||||||| ||| | ||| || ||||||||| || |||||||| | Sbjct 3513359 CTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAA 3513300 Query 118607 GATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTG 118666 ||| || |||||||| ||||| || || ||||||||||| ||| || || || | Sbjct 3513299 GATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTTCGACTTGACATT 3513240 Query 118667 TTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||||| ||| ||||| | ||| | || ||||| ||||| || || || Sbjct 3513239 GTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGAC 3513180 Query 118727 AAAAATCTGCAT 118738 || || ||||| Sbjct 3513179 GAAGATTTGCAT 3513168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||| || || ||||||||||| || ||||| |||||| Sbjct 3513605 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTC 3513546 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| | ||| ||||| || || || |||||||||||||| Sbjct 3513545 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 3513486 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | ||||| | |||||| || | || | || || Sbjct 3513485 AATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTT 3513426 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| ||||| || || || ||||||||| Sbjct 3513425 GCCGGTAAGAGTCTTGACGAAGATCTGCATG 3513395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| ||||| || ||||| || | || || ||||| ||||| || || Sbjct 3513136 GTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGCTTGCCG 3513077 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| ||||||| |||||||| |||||||| || ||||||||||| || || || Sbjct 3513076 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTGGACTTG 3513017 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | |||| ||| || | ||| ||||||| ||| | || ||||| |||| Sbjct 3513016 ACGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 3512962 >seq4 Length=1956354 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || ||| || || |||||||||||| || ||||| ||| Sbjct 193000 CAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATC 193059 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || |||||| |||| || |||||||| ||||| || |||||||||||||| Sbjct 193060 CTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 193119 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| ||||| | ||| ||||| | ||| | || Sbjct 193120 CTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGT 193179 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || || || ||||||||| Sbjct 193180 CTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 193213 >seq48 Length=300044 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGA 133278 || ||||||| || || |||||||||||||| ||||| | | || | || || ||| Sbjct 142689 ACGGGTTGACGACCTGGAACTCGCCGGCGAGCACGCGGCGCTGGTAGATGTTGGATGTGT 142748 Query 133279 ACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACG 133338 | || ||||| | ||||||||||| || ||||||| ||| | || ||||||||| || Sbjct 142749 AGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGACGTGCTGGCTGTGGGCATGGGCG 142808 Query 133339 CCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGT 133398 |||| | || ||||| | || |||| || || |||| | || | | | ||||| Sbjct 142809 CCACAAGCAGCGAGTTGCGCACACCGTGCTGCTTGATGTCGGCCTTGAGAGCCTCCCAGT 142868 Query 133399 CCCACAG 133405 |||| || Sbjct 142869 CCCAGAG 142875 >seq10 Length=1070767 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610 || || || ||||| ||| || ||| || ||||| ||||| || |||||| | ||| Sbjct 547407 TTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATG 547466 Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670 ||||||||||| |||||||| || ||||||||||| || || || || | ||| Sbjct 547467 AGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 547526 Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729 | ||||||| | ||||||||| | || | || ||||| || || || || || || Sbjct 547527 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAA 547585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829094034924