Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4 156 5e-33 seq1 122 1e-22 seq10 107 2e-18 >seq4 Length=1956354 Score = 156 bits (172), Expect = 5e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| ||||||||||| || || |||||||| | ||| || || | Sbjct 192997 ACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCC 193056 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| |||||||| || || ||||||||||||| || | || |||||| Sbjct 193057 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTT 193116 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || |||| | | | |||||||||||| ||||| || | ||||| Sbjct 193117 GTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGAT 193176 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||||||| || ||||| || ||||| ||||| Sbjct 193177 AGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 122 bits (134), Expect = 1e-22 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||||||||||| ||||| ||||| || | |||||||| | || || || ||| Sbjct 3513370 TGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTGC 3513311 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || ||||| || || || ||||||||||||| ||| | | |||||||||| ||| | || Sbjct 3513310 TTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCC-TGAATCTT 3513252 Query 43101 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | |||| | | | ||||| || ||||| || | ||||| || |||||||| Sbjct 3513251 CGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGT 3513192 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||||||||| Sbjct 3513191 CAGGGTCTTGACGAAGATTTGCAT 3513168 Score = 107 bits (118), Expect = 2e-18 Identities = 154/212 (73%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| || | ||||||||||| || || |||||||| | ||| || || | || || Sbjct 3513605 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTC 3513546 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || || || || | || |||||||| | || | || |||||||||| | Sbjct 3513545 CAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCC-T 3513487 Query 43094 GATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 43151 || | || | |||| ||| | | | |||||| || || || || | ||||||||| Sbjct 3513486 GAATCTTGCTCTTGA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTC 3513428 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| || ||||| ||||| Sbjct 3513427 TTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 102 bits (112), Expect = 9e-17 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| ||||||||| |||||||| || | || || || |||| || |||||| Sbjct 3513142 TGCAGCGTGGACTCCTTTTGGATATTGTAGTCCGAAAGGGTTCGGCCGTCCTCAAGCTGC 3513083 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||||||||||| || | | |||||||||| ||| || Sbjct 3513082 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATTCCCTCCTTGTCCTGGATCTTG 3513023 Query 43101 TGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | | | || || || ||||| |||| |||||||| |||||||| Sbjct 3513022 GACTTGA-CGTTGTCGATGGTATCAGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGT 3512964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42954 TGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 43013 ||||| || | | ||||| |||| || | || |||||| || || ||||| || Sbjct 3513853 TGTCCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCT 3513794 Query 43014 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCC 43073 | || || || | || || |||||||| || ||||| || || ||||||||||| | Sbjct 3513793 GACAAGGTGCGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGA 3513734 Query 43074 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCC 43133 || | || ||| |||||| ||| || || | | | | ||| ||| ||||| Sbjct 3513733 GGAATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCG 3513674 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| |||||||||||| || || | ||||| || ||||| ||||| Sbjct 3513673 ACTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 >seq10 Length=1070767 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || |||||||| || | ||||||||| |||| || |||||||| |||||||| | Sbjct 547405 CCTTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAA 547464 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 |||| ||||||||||||| || | | |||||||||| ||| || || | | Sbjct 547465 TGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGT 547524 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || || | |||||||| ||||| || || ||||| || | Sbjct 547525 CGATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGA 547584 Query 43174 AG 43175 || Sbjct 547585 AG 547586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571815834513160