Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4 161 6e-35 seq1 136 3e-27 seq10 118 7e-22 >seq4 Length=1956354 Score = 161 bits (178), Expect = 6e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||||||| | || || || ||||| |||||||| |||||| Sbjct 192986 CCACCACGCAGACGCAGCACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGAC 193045 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| ||| | || |||| ||||||||| ||||| || || |||||||||||| ||| Sbjct 193046 AGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGG 193105 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | | |||| ||| |||| || || Sbjct 193106 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACC 193165 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| ||||| || ||||| ||||||||||| Sbjct 193166 TCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 193212 >seq1 Length=4491949 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | ||| |||||||| | ||| || ||||| ||||||||||| || Sbjct 3513851 TCCACCACGCAGACGCAGGACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGA 3513792 Query 34222 CA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGG 34280 || | || ||| | || |||| ||||||||| ||||| || || ||||||||||| | Sbjct 3513791 CAAGGTG-CGGCCATCCTCCAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAG 3513733 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||| ||||| ||||| ||| | | | |||| ||||| ||||||| Sbjct 3513732 GAATGCCCTCTTTGTCCTGGATCTTGCTCTTCACGTTATCAATCGTATCGGATGATTCGA 3513673 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | |||||||||||| || || | || ||||| ||||||||||| Sbjct 3513672 CTTCGAGCGTGATGGTTTTTCCAGTCAAGGTCTTCACGAAGATCTGCAT 3513624 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||||||| | || || || ||||| |||||||| || ||| Sbjct 3513622 CCACCGCGCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGAC 3513563 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| || || || | || |||||||| ||| Sbjct 3513562 AGGGTGCGACCATCCTCCAGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGG 3513503 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | | |||| || | || ||||| Sbjct 3513502 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCAATCGTGTCTGATGACTCGACT 3513443 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||| |||||||| ||||| || || ||||||||||| Sbjct 3513442 TCCAGCGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATCTGCAT 3513396 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || || ||||| |||||||||||||| Sbjct 3513394 CCGCCACGGAGGCGGAGGACGAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAA 3513335 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||| || || || || || |||||||||||| || Sbjct 3513334 AGAGTCCGACCATCCTCGAGTTGCTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGG 3513275 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 3513274 ATACCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTGTCCGAAGACTCCACC 3513215 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||| || ||||| || || || || || ||||| ||||| Sbjct 3513214 TCCAAGGTGATAGTCTTGCCCGTCAGGGTCTTGACGAAGATTTGCAT 3513168 >seq10 Length=1070767 Score = 118 bits (130), Expect = 7e-22 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| || |||||||||||||| ||| |||| || | ||||||||| ||||||||| Sbjct 547407 TTCTGGATATTGTAGTCGGACAGAGTCCGGCCGTCCTCAAGCTGCTTGCCAGCGAAAATG 547466 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || |||||||||||| || | | ||||||||| ||||| ||| | || | | Sbjct 547467 AGACGCTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCG 547526 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 |||| || | || ||||| |||| |||||||| ||||| || || || ||||| ||| Sbjct 547527 ATCGTGTCCGAGGACTCGACCTCCAGAGTGATGGTCTTGCCAGTAAGGGTCTTCACGAAG 547586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071027452320