Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq48 170 4e-37 seq16 118 2e-21 seq21 93.3 9e-14 seq2 89.7 1e-12 >seq48 Length=300044 Score = 170 bits (188), Expect = 4e-37 Identities = 606/930 (65%), Gaps = 38/930 (4%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | | ||||| ||||| || |||||| ||||| || ||||| | || |||||| Sbjct 144183 TACCAGTACTTTGGCTTCAAGACCCTGGAGCGCTCGTACCTGCTCAAGCTCGACGGCAAG 144124 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||||| || || ||||||||| | ||||| || |||||||| || || || Sbjct 144123 ATCGTCGAGCGCCCCCAGCACATGATCATGCGTGTCGCTGTCGGCATCTGGGGCGACAAC 144064 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATG-AGTGAACGCTGGATGACACATGCCAC 248996 || ||| |||||||||||||||||| | ||| | | | | | | || || ||| | Sbjct 144063 ATTGAGCGCGTGCTCGAGACGTACAACCTCATGTCGAGCAAG-TACTTCACCCACGCCTC 144005 Query 248997 ACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGC 249056 ||| || |||||||||||||| || | | |||||| |||||||| || | | Sbjct 144004 ACCCACTCTCTTCAACGCCGGCACTCCCCAGGCCCAGCTGTCATCGTGCTTCCTCGTCGA 143945 Query 249057 CATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGAT 249113 |||| | |||||| |||| || || || ||||| || | |||| || | ||| Sbjct 143944 CATGAAGGACGACAGCATCGATGGTATCTACGACACCCTCA---AGACCTGTGCCATGAT 143888 Query 249114 TTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTA 249173 ||| || | || || || ||||| ||| | || | ||| || || | ||| || || Sbjct 143887 TTCCAAGATGGCCGGTGGTATCGGCCTCAACATCCACCGCATTCGTGCCACGGGCTCCTA 143828 Query 249174 CATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTC 249233 |||| || || || || | |||| ||||| ||| | || || ||| | Sbjct 143827 CATCGCCGGCACCAACGGCACCTCCAATGGCATCGTGCCCATGCTGCGTGTTTTTAACAA 143768 Query 249234 CACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGTA 249287 ||| || | | || |||||| || ||||| || | || ||||| || Sbjct 143767 CACGGCACGCTATGTCGACCAGGGTGGCAACAAGCGCC---CCGGCGCTTTTGCCATCTA 143711 Query 249288 TTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAA 249347 |||| ||||||||||| | || |||||||| ||| || |||||| ||||||| Sbjct 143710 CCTGGAGCCATGGCACGCCGACGTGTTCGAGTTCCTCGACCTGCGCAAGAACCACGGCAA 143651 Query 249348 CGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCG 249407 ||| || | || || ||||||||| | ||||||| || | ||| |||||||| Sbjct 143650 GGAGGAGATCCGCGCCCGCGACCTCTTCCTGGCCCTGTGGATCCCGGACCTGTTCATGAA 143591 Query 249408 CCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGA-CGCCCCGGACCTCA 249466 || || || ||||||| |||||||| | | || ||| ||||||| ||| Sbjct 143590 GCGGGTTGAGAAGAACGGCGACTGGACGCTCATGTGCCCCAACGAGTGCCCCGG-CCT-G 143533 Query 249467 TCGATCTAC-ACGGCGCCGACTTCGACCAAGC-CTATA--AGAAATACGAATCCAACGGC 249522 || || | |||||| || |||| | || || || |||| ||||| | ||| Sbjct 143532 GCGGACTGCTACGGCGAGGAGTTCG---AGGCTCTGTACGAGAAGTACGAGCGTGAGGGC 143476 Query 249523 A---TCGGCAAGACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGGAGTCCCAG 249576 | | ||||||| ||||||| | || || | ||| | | | ||| ||||| Sbjct 143475 AAGGGCCGCAAGACGCTCAAGGCGCAGAAGCTGTGGTATGCCA---TCCTCGAGGCCCAG 143419 Query 249577 ATAGAGACAGGGGGGCCGTATTAT-TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCA 249635 | ||||| || || | | || ||| ||| ||| |||||| |||||| ||||| Sbjct 143418 ACCGAGACTGGCAACCCCT-TCATGCTGTACAAGGACCACTGCAACCGCAAGAGCAACCA 143360 Query 249636 ACGGCATCTTGGTACCATCCGCTCGTCAAATCTCTGTGCAGAGGTGATTCAATACTCGTC 249695 | | || || ||||| ||| || || || || | ||| | || | |||||| | Sbjct 143359 GAAGAACCTGGGCACCATTCGCAGCTCCAACCTGTGCACCGAGATCATCGAGTACTCGGC 143300 Query 249696 CAAGGAGGAGATTGCCGTCTGCAACCTGGC 249725 || ||| | || || ||||||||||| Sbjct 143299 GCCCGACGAGGTGGCTGTGTGCAACCTGGC 143270 Score = 93.3 bits (102), Expect = 9e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 |||||||| || |||| ||| || || | | || || || || || | ||| ||| Sbjct 144567 TTCGACAAGATTACGGCCCGCGTCTCGAGGTTGTGCTACGGCCTCGACCTGAACCATGTC 144508 Query 248521 GATCATGTGGCCATCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACA 248580 || | || ||| ||||||| || || |||||||||||| ||| || || ||| Sbjct 144507 GACCCCGTCAAGATCACCCAGAAGGTCATCTCGGGCGTCTACGGCGGTGTCACCACGGTG 144448 Query 248581 GAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGACTAC 248640 | ||||| | | || || |||||||| || |||||| | | |||||||||||||| Sbjct 144447 CAGCTGGATGACCTGGCCGCCGAGACGGCCGCATACATGACCGTCACACACCCCGACTAC 144388 Query 248641 TCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAA 248681 | | ||||| | | | |||||||| || | || ||||| Sbjct 144387 GCCATCCTGGCTGCGCGCATCGCCGTGTCCAACCTGCACAA 144347 >seq16 Length=755317 Score = 118 bits (130), Expect = 2e-21 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 254000 CCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGC 254059 ||| ||||| | || || |||| ||||| || || |||||||| || ||||||||||| Sbjct 715120 CCTGCCTCACCTCCTGCTCTACGGGCCTCCGGGCACGGGCAAGACCTCGACCATCCTGGC 715179 Query 254060 GCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGC 254119 |||||||| | | | |||| | |||||||| || || || ||||||||||| Sbjct 715180 CCTGGCCCGGCGCATCTACGGCGCCGACAACATGAGGCAGATGGTCCTGGAGCTGAACGC 715239 Query 254120 TTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | |||||||| ||||| ||||||||||||| Sbjct 715240 CTCGGACGACCGCGGCATCGACGTCGTGCGCGAGCAGATCAAGACTTT 715287 >seq21 Length=593538 Score = 93.3 bits (102), Expect = 9e-14 Identities = 116/158 (73%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 254213 CAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCG 254272 |||||| |||||||||||||||||||||| ||||||| | | |||||| || || || Sbjct 78369 CAAGCTGGTGATCCTGGACGAGGCGGACAGCATGACGTCGGGGGCGCAGCAGGCGCTGCG 78310 Query 254273 CCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTC 254332 || |||||||||| ||||| |||||| || | | | ||||||| | ||| Sbjct 78309 GCGGACGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTTGCGTGCAACCA---GTC 78253 Query 254333 ---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCA 254367 |||||||||| |||||| || |||||||||| Sbjct 78252 CAACAAGATCATCGAGCCGCTGCAGTCGCGGTGCGCCA 78215 >seq2 Length=2981670 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| |||||| || | ||||| || ||||| ||| | ||||| || || ||| Sbjct 1573197 TGCCCGCCCTTCAAGATCATCATCCTCGATGAGGCCGACTCAATGACCCAGGATGCTCAG 1573256 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||| ||||| || |||||||| || | | || || || ||||| | ||| Sbjct 1573257 AGCGCCCTGCGCCGTACCATGGAGACCTACAGCAAGATCACCCGCTTCTGCCTTATCTGC 1573316 Query 254322 AACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGC 254381 |||||||| | || |||| ||| ||||| || |||||| |||||| | |||| Sbjct 1573317 AACTACGTCACCCGCATTATCGACCCACTGGCCTCGCGGTGCAGCAAGTTCAGGTTCAAG 1573376 Query 254382 ACCCTCG 254388 | ||||| Sbjct 1573377 AGCCTCG 1573383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073763001864896