Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 156 3e-33 seq4 140 3e-28 >seq1 Length=4491949 Score = 156 bits (172), Expect = 3e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 |||||| ||||||||||||||||||||||||||| || ||| | || || ||||| Sbjct 3513371 GTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCGGAAAGAGTCCGACCATCCTCGAGTTG 3513312 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| || || |||| ||||| |||||||| || | ||||||||||||| ||| || Sbjct 3513311 CTTTCCAGCAAAGATCAGGCGCTGCTGGTCGGGCGGGATACCCTCCTTGTCCTGAATCTT 3513252 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | ||||| | ||||||||||| ||| || ||||||||||| Sbjct 3513251 CGACTTGACATTGTCGATGGTGTCCGAAGACTCCACCTCCAAGGTGATAGTCTTGCCCGT 3513192 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||||||||| Sbjct 3513191 CAGGGTCTTGACGAAGATTTGCAT 3513168 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| |||||||| || ||| |||| | || ||| Sbjct 3513604 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTGCGACCATCCTCC 3513545 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||| || || ||||| || || | |||||||||||| | Sbjct 3513544 AGCTGCTTGCCCGCAAAGATCAAACGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 3513485 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | |||| ||| || |||| || || ||||| Sbjct 3513484 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCTGATGACTCGACTTCCAGCGTGATGGTCTT 3513426 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || |||||||| || ||||| |||||| Sbjct 3513425 GCCGGTAAGAGTCTTGACGAAGATCTGCATG 3513395 >seq4 Length=1956354 Score = 140 bits (154), Expect = 3e-28 Identities = 162/217 (75%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||||||||||||||||||| |||||||| ||| ||| ||| | || ||| Sbjct 193004 ACCAGGTGCAGCGTGCTCTCCTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCC 193063 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| |||||||| || | |||||||||||| Sbjct 193064 AGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 193123 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||||||||| | ||| || |||||| Sbjct 193124 ATCTTGGACTTGACATTGTCGATCGTGTCGCTCGACTCCACCTCAAGGGTGATAGTCTTG 193183 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG-TTGCCT 45343 ||||| || |||||||| ||||| |||||| |||||| Sbjct 193184 CCCGTGAGGGTCTTCACGAAGATCTGCATGATTGCCT 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074010700187