Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq48 489 1e-133 seq50 140 3e-28 seq4 102 7e-17 seq1 96.9 3e-15 >seq48 Length=300044 Score = 489 bits (542), Expect = 1e-133 Identities = 1248/1887 (66%), Gaps = 36/1887 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | ||||| | | |||||| || || |||||||| Sbjct 142345 CTGGTCGACGGTGAACTGGATAGGCTGGGCGGCAGCCTGGGTGCGGAGGTAGTACATGCC 142404 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 |||||| || || | |||||| || || || || ||||| | || || | || Sbjct 142405 CGTCTTGAGGCCGAGCTTCCAGCCGGCGAAGTGCATGGACGTGATCTTGCCCATGGTGGG 142464 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | | ||||| | |||| |||||| ||| ||||| || || || || ||||| || Sbjct 142465 CTCGCGCATGTGGATGTTGAGCGACTGCGACTGGTCGATGAAGGCGCCGCGGTCGGCTGC 142524 Query 22285 CATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 ||| | | | || ||| ||| || ||||| || ||||||||||| || || | || Sbjct 142525 CATCTGGACGACGGTGCGCTGCGAGATCTCCCAGACCGTCTTGTACAGGCGCTTGGTGTC 142584 Query 22345 TAACGGTATCGATT-CGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || | || | |||| |||||| ||| ||| | | ||||| || || | Sbjct 142585 CTCGGGGA-CGCTGGCGATGTTCTGGATGGAGCCGCCCTCGGCGATGATGCGGTTCTTCA 142643 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| ||||| || | || || || |||| ||| |||| || || | Sbjct 142644 TGTTGTCGGACCACAGGCCAAGCTCGACCAGGTCCTTGAGCAGCCACGGGTTGACGACCT 142703 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||||| | |||||||| ||||| |||||||||||| | || ||||| | | Sbjct 142704 GGAACTCGCCGGCGAGCACGCGGCGCTGGTAGATGTTGGATGTGTAGGGCTCGAAGCACT 142763 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||| | || || || ||||| ||||||| || ||||||| Sbjct 142764 CGTTGTTGCCCAGGATCTGCGACGTGCTGGCTGTGGGCATGGGCGCCACAAGCAGCGAGT 142823 Query 22584 TTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGA 22641 | | || ||||||| |||| | || |||| || ||||||||| || || || Sbjct 142824 TGCGCACACCGTGCTGCTTGATGTCGGCCTTGAGAGCCTC--CCAGTCCCAGAGCTCCGA 142881 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC--GCGACTCGCCGGGCTGCCT 22699 |||| | || || |||||| ||||| |||| | ||| ||||| | || ||| Sbjct 142882 CGGCTTGACGTT---CCACATGTCGTACTGCAGAATGCCCTGCGACACA--GGCGAGCCC 142936 Query 22700 TCGTACGTTTCGTACGGACCATATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 |||||||| ||| | || | || || || || ||||| || || ||| | Sbjct 142937 TCGTACGTCGAGTAGGTGCCCTGC-TCACGCGCCAGCTCGCACGAGGCGGTCAGGGCGGC 142995 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC----GGCGACGCTTTCGT 22814 || || || ||||| ||||| | |||||| | ||| || |||||| ||| Sbjct 142996 GTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCGCGAGCCTCGGGCGAC----TCGA 143051 Query 22815 ACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTC 22874 | |||| |||| | || ||| || || |||| |||||| ||||| | ||||| || | Sbjct 143052 AGGGCAGGCGCAGCGCCAGGAAGGCATCAGCCAGACCCTGCACGCCCAGGCCGATGGGCC 143111 Query 22875 GGTTTTTCAGATTCGACACTTTTGC----CTCGGGCAAAGGATACCAATTCGAATCGATT 22930 || || || || |||| ||| | | || || | || ||||| Sbjct 143112 TGTGGCGCATGTTG----CTGTTGCGAGCCTCCTGGACCGGGTAGTAGTTGACGTCGATG 143167 Query 22931 GTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAA 22990 | |||| | ||| | |||| | || | | |||||||| Sbjct 143168 ATCTTGTTAAGGTTACGAACGACAACCTGGGTCACCTCGTGGAGCTTCTGGAAGTCGTAG 143227 Query 22991 ACGCCCGA-TTGTA--CAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 | ||| ||||| | | ||||| | || | ||| || || ||||| || ||| Sbjct 143228 GCTCCCTCGTTGTAGTCGATAAACTGCGGCAGCGCCAGCGACGCCAGGTTGCACACAGCC 143287 Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| | || |||||| | || ||||| || || ||| | || ||| Sbjct 143288 ACCTCGTCGGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTGGAGCTGCGAATGGTG 143347 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || |||||||||| || || ||||| |||||||| |||||| | || || Sbjct 143348 CCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTACAGCATGAAGGGGTTG 143407 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGC 23227 || |||||| ||| | ||||| ||| || ||||| |||| || | | |||| Sbjct 143408 CCAGTCTCGGTCTGGGCCTCGAGGATGGCATACCACAGCTTCTGCGCCTTGAG-CGTCTT 143466 Query 23228 ACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACA 23286 || ||| ||| || ||||||||| | ||||| || || || || | ||||| || Sbjct 143467 GCGGCCCTTGCCCTCACGCTCGTACTTCTCGTACAGAGCCTCGAACTCCTCGCCGTAGCA 143526 Query 23287 GTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAAC 23346 ||| ||||||||||| | | | || |||||||| |||| || || ||||| Sbjct 143527 GTCCGCCAGGCCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAAC 143586 Query 23347 GCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTC 23406 || |||| || || ||||| ||||| || || ||| || ||||||||||| | ||| Sbjct 143587 CCGCTTCATGAACAGGTCCGGGATCCACAGGGCCAGGAAGAGGTCGCGGGCGCGGATCTC 143646 Query 23407 CTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTC 23466 ||| |||||| |||||| || || | || || |||||||| || ||||| ||||| Sbjct 143647 CTCCTTGCCGTGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCATGGCTC 143706 Query 23467 GAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGT 23526 ||||| | |||||| ||||| || | ||| ||||| ||||| ||||| || || ||||| Sbjct 143707 CAGGTAGATGGCAAAAGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGTGCCGT 143766 Query 23527 GTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCAC 23586 |||||| | || | ||||| ||||||| || ||||| | |||| ||| || | Sbjct 143767 GTTGTTAAAAACACGCAGCATGGGCACGATGCCATTGGAGGTGCCGTTGGTGCCGGCGAT 143826 Query 23587 ACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGA 23646 || || | || |||| | ||| | || || || || || ||| || || || Sbjct 143827 GTAGGAGCCCGTGGCACGAATGCGGTGGATGTTGAGGCCGATACCACCGGCCATCTTGGA 143886 Query 23647 TATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGC 23706 ||||| || || || || ||||||||||| || ||||||||||| || || | | Sbjct 143887 AATCATGGCACAGGTCTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTC 143946 Query 23707 GACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCT 23766 ||| | ||| ||||| |||| || || | ||| || |||| ||| || || || Sbjct 143947 GACGAGGAAGCACGATGACAGCTGGGCCTGGGGAGTGCCGGCGTTGAAGAGAGTGGGTGA 144006 Query 23767 GGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTC 23826 |||||| || ||||| ||||||| || |||||||| |||| || ||||||| Sbjct 144007 GGCGTGGGTGAAGTACTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCAATGTT 144066 Query 23827 CTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGAC 23886 || || || |||| ||||| ||||| ||||||| || || | |||||| | Sbjct 144067 GTCGCCCCAGATGCCGACAGCGACACGCATGATCATGTGCTGGGGGCGCTCGACGATCTT 144126 Query 23887 GCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTT 23946 ||||| | |||| ||| || || || | || || || || ||||| || | ||||| Sbjct 144127 GCCGTCGAGCTTGAGCAGGTACGAGCGCTCCAGGGTCTTGAAGCCAAAGTACTGGTAGTT 144186 Query 23947 AAAGTCACGATCGTGCACTATGGCCGA 23973 ||||| || || | || |||||||| Sbjct 144187 GAAGTCCCGGTCATAGACGATGGCCGA 144213 >seq50 Length=290317 Score = 140 bits (154), Expect = 3e-28 Identities = 220/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || |||||||||||||| ||||| ||||| || |||||| | || || Sbjct 113170 CTCATTGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGAGCCTTTGCCTCTATCTTC 113229 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| |||||||||||||||||||| || || ||||||| | || || || Sbjct 113230 TGGCTGAAGAAGCGCGGCCTGATGCCCGGCCTTACCTTCTCCAACGAGCTCATCTCTCGT 113289 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG 58154 || ||||| || || || || ||||| ||||| | | ||| ||||| || | || Sbjct 113290 GATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTTCTCCCACATGAAGAACAGGCCC 113349 Query 58155 ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTC 58214 | | | ||| ||| || ||| ||| || ||| |||||| | ||||| | Sbjct 113350 AGCAAGCAAATGATCGAGGAGATCATCGTCGATGCCGTCAAGATCGAGCAAGAGTTCCTG 113409 Query 58215 ACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATT 58274 ||||| ||||| ||| || |||||||||||||| | | ||| ||||||| Sbjct 113410 ACCGAGGCCCTGCCGTGTGCTCTGCTCGGTATGAACTCGAACCTCATGAAGCAGTACATC 113469 Query 58275 GAGTTTGTTGCCGAC 58289 |||||||| || ||| Sbjct 113470 GAGTTTGTGGCAGAC 113484 Score = 104 bits (114), Expect = 2e-17 Identities = 229/340 (67%), Gaps = 5/340 (1%) Strand=Plus/Plus Query 57563 TCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGT 57622 |||| | || ||| | |||||||| ||||| || || ||||| ||||| | ||| || | Sbjct 112251 TCCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCGTTCTGGACAGCCGAGGAGAT 112310 Query 57623 AGACCTGTCTAAGGATCTGAGCGATTGGGATTCC---CTCAAAGAATCTGAGAGAAATTT 57679 |||||||| ||||| || ||| ||| | | ||||| || ||||| | || Sbjct 112311 CGACCTGTCCAAGGACCTCCACGACTGGAACAACAAGCTCAACGACGATGAGAAGTACTT 112370 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || ||| | | || || || ||||| || ||||| || || |||||||| ||||| Sbjct 112371 CATCTCACATATCCTCGCCTTCTTTGCCGCCTCGGATGGCATCGTCAACGAGAACTTGGT 112430 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 || | || ||||| || || | ||||| | ||||| ||||||||||| | Sbjct 112431 GGAGCGCTTCAGCGGCGAAGTCCAGGTTCCCGAGGCCCGTTGCTTCTACGGATTTCAGAT 112490 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || ||||| || ||||| || ||| | ||||| Sbjct 112491 CATGATGGAGAACATCCACTCTGAGACCTACTCGCTCCTGATCGACACCTACATCAAGGA 112550 Query 57860 CAACGACGAG-AAACGTAGACTGTTCAACGCGATCGAAAC 57898 || | || ||| || || |||||||| || || || Sbjct 112551 GCCCGCCCAGCGAACCTA-CCTCTTCAACGCCATTGACAC 112589 >seq4 Length=1956354 Score = 102 bits (112), Expect = 7e-17 Identities = 169/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 31188 CAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAAC 31247 ||| |||||| || ||||| ||||| || || ||||| || |||||| | || || || Sbjct 193217 CAATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGT 193158 Query 31248 CGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || ||||| |||| | ||||| | || ||||||||| ||| | || |||| Sbjct 193157 CGAGCGACACGATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCG 193098 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 |||||||||| || || ||||||||||| ||| |||| || || || ||||| Sbjct 193097 ACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATT 193038 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGA 31423 | ||||| || || || || || || ||||| || | ||| | || ||| ||| Sbjct 193037 ACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGTCTGCGTGGTGGTGGCAAGA 192978 Query 31424 AGCG 31427 |||| Sbjct 192977 AGCG 192974 >seq1 Length=4491949 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 3513168 ATGCAAATCTTCGTCAAGACCCTGACGGGCAAGACTATCACCTTGGAGGTGGAGTCTTCG 3513227 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | |||||||||||| Sbjct 3513228 GACACCATCGACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGTATCCCGCCCGACCAG 3513287 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || || | || || | |||| | ||| || ||| Sbjct 3513288 CAGCGCCTGATCTTTGCTGGAAAGCAACTCGAGGATGGTCGGACTCTTTCCGACTACAAC 3513347 Query 31373 ATTCAAAAAGA 31383 ||||| || || Sbjct 3513348 ATTCAGAAGGA 3513358 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| || ||||| ||||| |||| || ||| | || Sbjct 3513623 CATGCAGATCTTCGTGAAGACCTTGACTGGAAAAACCATCACGCTCGAAGTCGAATCATC 3513682 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | | || | || || ||| || | | |||||| || ||| | || || || Sbjct 3513683 CGATACGATTGATAACGTGAA---GAGCAAGATCCAGGACAAAGAGGGCATTCCTCCGGA 3513739 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||| || || ||||| ||||| ||| |||| || || || || || Sbjct 3513740 CCAGCAGCGCCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGCACCTTGTCAGACTA 3513799 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 3513800 CAACATCCAGAAGGAGTCGACTCTCCACCTGGTCCT 3513835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765023696240