Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Falciphora_20oryzae_20[genbank_20GCA_5F000733355.1_202014-07-25] 247 sequences; 50,779,446 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq48 105 9e-18 >seq48 Length=300044 Score = 105 bits (116), Expect = 9e-18 Identities = 383/596 (64%), Gaps = 10/596 (2%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || || || || ||||| | | ||| || || | | | || || ||||| Sbjct 143537 CCGGGGCACTCGTTGGGGCACATGAGCGTCCAGTCGCCGTTCTTCTCAACCCGCTTCATG 143596 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || || || || ||||| || || | || || || | || | |||||| || || Sbjct 143597 AACAGGTCCGGGATCCACAGGGCCAGGAAGAGGTCGCGGGCGCGGATCTCCTCCTTGCCG 143656 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 ||||| || ||||||||| | | | || | ||||| || |||| ||| ||| Sbjct 143657 TGGTTCTTGCGCAGGTCGAGGAACTCGAACACGTCGGCGTGCCATGGCTCCAGGTAGATG 143716 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | | || || || ||||| || ||||| || | || | || ||||| ||| || Sbjct 143717 GCAAAAGCGCCGGGGCGCTTGTTGCCACCCTGGTCGACATAGCGTGCCGTGTTGTTAAAA 143776 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || ||| || | || |||||||| | || ||||| |||| ||| ||| || Sbjct 143777 ACACGCAGCATGGGCACGATGCCATTGGAGGTGCCGTTGGTGCCGGCGATGTAGGAGCCC 143836 Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333 |||||||||| | || || || || || || ||||| || || || | || Sbjct 143837 GTGGCACGAATGCGGTGGATGTTGAGGCCGATACCACCGGCCATCTTGGAAATCATGGCA 143896 Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393 || || | || || ||||| || || || || || ||| |||||| | || || Sbjct 143897 CAGGTCTTGAGGGTGTCGTAGATACCATCGATGCTGTCGTCCTTCATGTCGACGAGGAAG 143956 Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453 || |||| ||| | ||| || || || || | || || || ||||| || Sbjct 143957 CACGATGACAGCTGGGCCTGGGGAGTGCCGGCGTTGAAGAGAGTGGGTGAGGCGTGGGTG 144016 Query 72454 AACCATTTTTCAGACAGTAGATTGTACGTCT----CAATAGCTGATTCTATATC-CCATT 72508 || | || |||| || |||||||||| || ||| | | | | || || Sbjct 144017 AAGTACTTGCTCGACATGAGGTTGTACGTCTCGAGCACGCGCTCAATGT-TGTCGCCCCA 144075 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTG 72564 |||| || || ||||||||||| | ||| ||||| || | || ||||||||| Sbjct 144076 GATG----CCGACAGCGACACGCATGATCATGTGCTGGGGGCGCTCGACGATCTTG 144127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671137127857720